Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3203g00022 ATGGAAGAGATTTACAGTGTGAAACCTCATTTGTCTTGTACAGAGGATGATGTTAGAGTCGGCAACGTGAGTGTTTCTACTACTTCTGAATTGCATCTGGGATCAGTGCCTAATGATTATCTACAGCTGGAAGAGGTAACCGAGTCTGATATCTCGGATCGGATGATCAAGATCCAGATCGCAAATCATCCTCTTTATCCAGATTTAGTATCTGCATACATAGAATGCCAAAAGGTTGGAGCACCACCAGAACTGGCATCCCTTCTCGAAGAAATAGGCCGAGAAATTCACCCCATGAATGCTCGCCCTGAGATAGGGGATGGTCCTGAACTTGACGAGTTCATGGAATCATACTGCGAAGTTCTTCATAGATACAAAGAGGAGCTGTCCAAACCCTTCAATGAAGCGACTTTGTTTTTGGGCAGTATGGAATCACAACTCAGCAACCTTTGTAAGGGAACACTAACAAAGTCATCGGATAATAACCGCTCGGAGCCCGTGTGTTTTGGATTATTGTCAGATGAGGAATTAAGAAGTGAGGAGATAGAAGGAGTTGAAGGTCATGAATCTTCTGGGACTCGCCCAGGTGATCAAAAGGTTAAAGAAATGCTCCTTCATAAGTACAGTGGCCATTTTAGCAGTTTGAGAAAGGAATTTCTAAAAAGAAGGAAAAAGGGTAAGTTACCAAAGGATGCAAGGATGGCACTAATGGACTGGTGGAACACCCATCATAGATGGCCATATCCTACGGAGGAGGAGAAAGTGAAGTTATCAGACGATACTGGACTGGATCAAAAACAGATAAATAATTGGTTTATCAATCAGAGAAAACGGCATTGGAAACCAACAGAGGATATGCGATTTGCCATTATGGAAGGGGTAAGCGGTGTCGGCATAGGAGAACCTATGTTTTTCTAG 918 0.4292 MEEIYSVKPHLSCTEDDVRVGNVSVSTTSELHLGSVPNDYLQLEEVTESDISDRMIKIQIANHPLYPDLVSAYIECQKVGAPPELASLLEEIGREIHPMNARPEIGDGPELDEFMESYCEVLHRYKEELSKPFNEATLFLGSMESQLSNLCKGTLTKSSDNNRSEPVCFGLLSDEELRSEEIEGVEGHESSGTRPGDQKVKEMLLHKYSGHFSSLRKEFLKRRKKGKLPKDARMALMDWWNTHHRWPYPTEEEKVKLSDDTGLDQKQINNWFINQRKRHWKPTEDMRFAIMEGVSGVGIGEPMFF 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3203g00022 305 SUPERFAMILY Homeodomain-like 221 290 IPR009057 -
Gabi3203g00022 305 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 72 289 - -
Gabi3203g00022 305 ProSitePatterns 'Homeobox' domain signature. 257 280 IPR017970 GO:0000981|GO:0006355
Gabi3203g00022 305 SMART HOX_1 221 286 IPR001356 GO:0003677
Gabi3203g00022 305 Pfam KNOX1 domain 56 97 IPR005540 GO:0003677|GO:0005634
Gabi3203g00022 305 Pfam Homeobox KN domain 239 278 IPR008422 GO:0003677|GO:0006355
Gabi3203g00022 305 ProSiteProfiles 'Homeobox' domain profile. 219 282 IPR001356 GO:0003677
Gabi3203g00022 305 SMART KNOX1_2 54 98 IPR005540 GO:0003677|GO:0005634
Gabi3203g00022 305 SMART ELK_2 199 220 IPR005539 GO:0003677
Gabi3203g00022 305 CDD homeodomain 222 282 IPR001356 GO:0003677
Gabi3203g00022 305 Gene3D - 217 289 - -
Gabi3203g00022 305 Pfam ELK domain 201 220 IPR005539 GO:0003677
Gabi3203g00022 305 SMART KNOX2_2 101 152 IPR005541 GO:0003677|GO:0005634
Gabi3203g00022 305 Pfam KNOX2 domain 105 151 IPR005541 GO:0003677|GO:0005634
Gabi3203g00022 305 ProSiteProfiles ELK domain profile. 199 219 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3203g00022 Gabi-Chr3203 196712 201049 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3203g00022 47 292 Homeobox Transcription Factor Family AT1G70510 50.579 2.34e-81 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Gabi3203g00022 KNOX2 3.9e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3203g00022 - - gmx:102660463 447.973