Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3201g00018 ATGGAACAGGATCAATGTTGGATGCAGACAAAGAGGAAGTACTCTGTGGGTTCTAGTCTTAATTTGCCAACTAACCTTTCCTATGGTGACTCATGGGAAGAACAAGCTTTTGCAGAAGATGCAGCTGGGTCTCTTGGTGGTTGCATATGGCCACCAAGATCATATTCTTGCAGCTTTTGCAGAAGAGAATTCAGGTCAGCACAAGCACTAGGTGGCCATATGAATGTTCATAGAAGAGATAGAGCAAGATTAAAACAACCCTCTAGTCCCAAGAATAATGAAATTCTATATCATGACCTTGAAACTAATCACCACCACAAGCCAGTTCCAAATCCTTTTGCATCTTTGGGTTATCTATACCCTTCTCCTCCTGTTTGTGGATTGGATTATAAAACTAACCCTAATTCTGATCCTGATTTTCTTGCTTCAACTTCATCACCCTCACCTTCCAAGGCTTTAGCCCCATCAGTTAATGGAAACTCCATAAGGGAAACCCTGATTCCACTTTATAATTCTTCTATTCTCCACAATGTTGCCTCTGTCAATTCTTCTGAATCATGGCCAACTTTACCTGGAGATCACAGATTATATTCACCTAAGTTCCACCCTGAAGCTGATATTAGGAAATTCTCAAAGGGAATAATGGATTCTAGGTGTAGGTGTAAGGGTGATAATAATGATGATACTGATGTGCCTATGAGTTTGAATTTGGTTGTGTGTAGAGCTCACCCATCTTTGCAGTTTGAGACTAAAGATGAAGATATCAATTGCAAGAAGAGGAAAACAGATGCTTCCTCAATTCCAATTTTCCCAAAGTCAAACTCTGTTGATAGACATCATATGCAACCCCAGATGTTTGAATTAAACTCTAGTTCCATTGAAGAGCTAGATCTGGAGTTAAGGCTTGGTAACAGGTCTTAA 921 0.3985 MEQDQCWMQTKRKYSVGSSLNLPTNLSYGDSWEEQAFAEDAAGSLGGCIWPPRSYSCSFCRREFRSAQALGGHMNVHRRDRARLKQPSSPKNNEILYHDLETNHHHKPVPNPFASLGYLYPSPPVCGLDYKTNPNSDPDFLASTSSPSPSKALAPSVNGNSIRETLIPLYNSSILHNVASVNSSESWPTLPGDHRLYSPKFHPEADIRKFSKGIMDSRCRCKGDNNDDTDVPMSLNLVVCRAHPSLQFETKDEDINCKKRKTDASSIPIFPKSNSVDRHHMQPQMFELNSSSIEELDLELRLGNRS 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3201g00018 306 ProSitePatterns Zinc finger C2H2 type domain signature. 57 77 IPR013087 -
Gabi3201g00018 306 PANTHER OS07G0101800 PROTEIN 27 305 - -
Gabi3201g00018 306 ProSiteProfiles Zinc finger C2H2 type domain profile. 55 82 IPR013087 -
Gabi3201g00018 306 Pfam C2H2-type zinc finger 55 79 - -
Gabi3201g00018 306 MobiDBLite consensus disorder prediction 137 156 - -
Gabi3201g00018 306 SMART c2h2final6 55 77 IPR013087 -
Gabi3201g00018 306 Gene3D Classic Zinc Finger 52 107 - -
Gabi3201g00018 306 SUPERFAMILY beta-beta-alpha zinc fingers 52 81 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3201g00018 Gabi-Chr3201 235501 236421 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3201g00018 22 304 C2H2 Transcription Factor Family AT2G37740 33.022 5.99e-28 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi3201g00018 zf-C2H2_6 1.3e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3201g00018 - - gmx:100801427 404.831