Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3201g00010 ATGTTGAATCGTGGGTCAAATGTTTCGGCTGAAGGGGTGGTTTGTTCCGGTGAGGATGAGCTGTATGTGCAGCAATGGAAGGCCTGTGCGGGCCCACTGGTCGATGTTCCTGGTGTTGGCCAGAGAGTCTTCTATTTCCCTCAAGGACACACCGAGCAATTAGAGGTGTCAACAAATCAAGAACTGAATCAGAGAATTCCTCTGTTGAAACTTCCCACAAAGATCCTTTGTCGTGTCGTGAATGTCCATTTACTGGCTGAACAAGAAACAGATGAGGTTTATGCACAGATTACTTTGGTTCCAGAATCTAATCAAGCTGAGCCTACTAGCTCTGATCCGTGCACTGCTGAACCTCCGAGGGCAACAGTTCATTCATTCTGCAAGGTCTTAACGGCTTCAGATACCAGCACACATGGTGGCTTCTCTGTTCTCAGGAAACATGCCACGGAATGCCTTCCTGCTTTGGACATGTCTCAACCAACACCAACACAAGAATTGGTCGCCAAGGATCTTCATGGTTATGAATGGCGCTTTAAACATATATTTAGAGGTCAGCCACGCAGACACTTACTCACGACTGGATGGAGTACTTTTGTGACATCCAAGAGATTAGTTGCTGGAGATACCTTTGTGTTTTTGAGAGGGGAAAACGGGGAATTACGCGTTGGAGTGAGGCGTCTTGCTCGTCAGCCAAGTAGCTTGCCATCATCTGTGATTTCCAGTCAGAGCATGCACCTAGGAGTGCTTGCAACTGCCTCTCATGCTGTTTCAACTCAGACTCTTTTTGTAGTATATTATAAGCCAAGGACGAGCCAGTTCATCATAAGCGTGAACAGGTACTTGGAGGCTATCAACAATAAGTTTAGTGTTGGCATGAGGTTCAAGATGAGGTTTGAGGGGGATGATTCTACTGAGAACGACAAAAGATTTTCGGGTACAGTTGTTGGAGTAGAAGATATTTCTCCTTATTGGGTAGATTCAAAATGGCGATCACTTAAGGTTCAATGGGATGAAGCTGCAGCTGTTACAAGACCGGATAGGGTTTCACCATGGGAGATAGAACCTTTTGTGGCTTCTGCTTTGACACCCTCAATTCAACCAACAGTTGTAAAGACTAAAAGGCCTCGTCCCCCCAGTGAAATTCCAGATGTTGACACGACATCGGCTGCTTCTGTTTTCTGGGATGCGGGGCGTACTGATATGAGTAGTAAAAGCAACAGCAACACTATATTAAGGAATACAACAGAAGGAAGTTGGCTATCTTCTCCAAATTCTAGTTGTCCTTCTCATTTGATTCAGGACACAACAGATGATAGCAAGAGTGTCTCGGCTTGGCCTGTTTCAAATCCTCAGTCATCCAGATTGAACAACAATCCTGTGCTTGTTGACCAAGTTGATAAGGAGAACAAAATCGAGACTGCTACGAGTTATCGATTGTTTGGAATCGAGCTTATTGATCATTCCAGGAACTCACCTGCTGTAGAAAAGGCATCAACACATGCAGTAAATGTACCAAGAGTTATTACAACTGAAGGCTATGTTAGCGCTGTGTCCAGAATTGATGCTGGCCATAAGTCTGATGTATCAAAGGCTTCGAAGGAGAGGAAACAAGAACAGCAGCAAGTACCCCCAAAGGAGACTCAGAACAAGCAAATTTGTAGCAGAAGTCGCACCAAGGTTCAAATGCAGGGGGTTGCAGTGGGTCGCGCCGTGGATTTGACAACGTTGGATGGGTATAATCAACTTATTGATGAGTTAGAAGAGCTTTTCGACATAAAGGGACAGCTTCAAGTCAGAAATAAGTGGGAAATTGTCTTCACTGATGATGAAGGGGATATGATGCTTGTGGGAGATGATCCATGGCCTGAATTCTGTAATATGGTGAGAAGAATCTTCATTTGTTCCAGCCAGGATGTGAAGAAGATGAGTTCAGGAAGCAAACTTCCAATCTCTTCAATCGAAGAAGGGACTGTAATTAGCTCAGACACAACTGAAACCTGA 2001 0.4468 MLNRGSNVSAEGVVCSGEDELYVQQWKACAGPLVDVPGVGQRVFYFPQGHTEQLEVSTNQELNQRIPLLKLPTKILCRVVNVHLLAEQETDEVYAQITLVPESNQAEPTSSDPCTAEPPRATVHSFCKVLTASDTSTHGGFSVLRKHATECLPALDMSQPTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGENGELRVGVRRLARQPSSLPSSVISSQSMHLGVLATASHAVSTQTLFVVYYKPRTSQFIISVNRYLEAINNKFSVGMRFKMRFEGDDSTENDKRFSGTVVGVEDISPYWVDSKWRSLKVQWDEAAAVTRPDRVSPWEIEPFVASALTPSIQPTVVKTKRPRPPSEIPDVDTTSAASVFWDAGRTDMSSKSNSNTILRNTTEGSWLSSPNSSCPSHLIQDTTDDSKSVSAWPVSNPQSSRLNNNPVLVDQVDKENKIETATSYRLFGIELIDHSRNSPAVEKASTHAVNVPRVITTEGYVSAVSRIDAGHKSDVSKASKERKQEQQQVPPKETQNKQICSRSRTKVQMQGVAVGRAVDLTTLDGYNQLIDELEELFDIKGQLQVRNKWEIVFTDDEGDMMLVGDDPWPEFCNMVRRIFICSSQDVKKMSSGSKLPISSIEEGTVISSDTTET 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3201g00010 666 ProSiteProfiles B3 DNA-binding domain profile. 126 228 IPR003340 GO:0003677
Gabi3201g00010 666 ProSiteProfiles PB1 domain profile. 555 636 IPR000270 GO:0005515
Gabi3201g00010 666 SUPERFAMILY CAD & PB1 domains 556 631 - -
Gabi3201g00010 666 MobiDBLite consensus disorder prediction 524 555 - -
Gabi3201g00010 666 FunFam Auxin response factor 550 643 - -
Gabi3201g00010 666 MobiDBLite consensus disorder prediction 524 541 - -
Gabi3201g00010 666 Gene3D - 287 361 - -
Gabi3201g00010 666 MobiDBLite consensus disorder prediction 415 457 - -
Gabi3201g00010 666 SMART B3_2 126 228 IPR003340 GO:0003677
Gabi3201g00010 666 Gene3D - 123 227 IPR015300 -
Gabi3201g00010 666 FunFam Auxin response factor 124 228 - -
Gabi3201g00010 666 Gene3D - 551 643 - -
Gabi3201g00010 666 Pfam B3 DNA binding domain 126 226 IPR003340 GO:0003677
Gabi3201g00010 666 SUPERFAMILY DNA-binding pseudobarrel domain 117 255 IPR015300 -
Gabi3201g00010 666 CDD B3_DNA 124 226 IPR003340 GO:0003677
Gabi3201g00010 666 Pfam AUX/IAA family 533 591 IPR033389 -
Gabi3201g00010 666 Pfam AUX/IAA family 601 639 IPR033389 -
Gabi3201g00010 666 FunFam Auxin response factor 287 360 - -
Gabi3201g00010 666 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 20 643 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gabi3201g00010 666 Pfam Auxin response factor 252 333 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3201g00010 Gabi-Chr3201 71706 76157 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3201g00010 17 648 B3 DNA Binding Superfamily AT4G23980 60.188 0.0 720
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gabi3201g00010 B3 5.2e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3201g00010 K14486 - gmx:100803911 1120.53