Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3201g00009 ATGTTGAATCGTGGGTCAAATGTTTCGGCTGAAGGGGTGGTTTGTTCCGGTGAGGATGAGCTGTATGTGCAGCAATGGAAGGCCTGTGCGGGCCCACTGGTCGATGTTCCTGGTGTTGGCCAGAGAGTCTTCTATTTCCCTCAAGGACACACCGAGCAATTAGAGGTGTCAACAAATCAAGAACTGAATCAGAGAATTCCTCTGTTGAAACTTCCCACAAAGATCCTTTGTCGTGTCGTGAATGTCCATTTACTGGCTGAACAAGAAACAGATGAGGTTTATGCACAGATTACTTTGGTTCCAGAATCTAATATTCTAATGGAACAAATGTATCAGCAAGCTGAGCCTACTAGCTCTGATCCGTGCACTGCTGAACCTCCGAGGGCAACAGTTCATTCATTCTGCAAGGTCTTAACGGCTTCAGATACCAGCACACATGGTGGCTTCTCTGTTCTCAGGAAACATGCCACGGAATGCCTTCCTGCTTTGGACATGTCTCAACCAACACCAACACAAGAATTGGTCGCCAAGGATCTTCATGGTTATGAATGGCGCTTTAAACATATATTTAGAGGTCAGCCACGCAGACACTTACTCACGACTGGATGGAGTACTTTTGTGACATCCAAGAGATTAGTTGCTGGAGATACCTTTGTGTTTTTGAGAGGGGAAAACGGGGAATTACGCGTTGGAGTGAGGCGTCTTGCTCGTCAGCCAAGTAGCTTGCCATCATCTGTGATTTCCAGTCAGAGCATGCACCTAGGAGTGCTTGCAACTGCCTCTCATGCTGTTTCAACTCAGACTCTTTTTGTAGTATATTATAAGCCAAGGACGAGCCAGTTCATCATAAGCGTGAACAGGTACTTGGAGGCTATCAACAATAAGTTTAGTGTTGGCATGAGGTTCAAGATGAGGTTTGAGGGGGATGATTCTACTGAGAACGACAAAAGATTTTCGGGTACAGTTGTTGGAGTAGAAGATATTTCTCCTTATTGGGTAGATTCAAAATGGCGATCACTTAAGGTTCAATGGGATGAAGCTGCAGCTGTTACAAGACCGGATAGGGTTTCACCATGGGAGATAGAACCTTTTGTGGCTTCTGCTTTGACACCCTCAATTCAACCAACAGTTGTAAAGACTAAAAGGCCTCGTCCCCCCAGTGAAATTCCAGATGTTGACACGACATCGGCTGCTTCTGTTTTCTGGGATGCGGGGCGTACTGATATGAGTAGTAAAAGCAACAGCAACACTATATTAAGGAATACAACAGAAGGAAGTTGGCTATCTTCTCCAAATTCTAGTTGTCCTTCTCATTTGATTCAGGACACAACAGATGATAGCAAGAGTGTCTCGGCTTGGCCTGTTTCAAATCCTCAGTCATCCAGATTGAACAACAATCCTGTGCTTGTTGACCAAGTTGATAAGGAGAACAAAATCGAGACTGCTACGAGTTATCGATTGTTTGGAATCGAGCTTATTGATCATTCCAGGAACTCACCTGCTGTAGAAAAGGCATCAACACATGCAGTAAATGTACCAAGAGTTATTACAACTGAAGGCTATGTTAGCGCTGTGTCCAGAATTGATGCTGGCCATAAGTCTGATGTATCAAAGGCTTCGAAGGAGAGGAAACAAGAACAGCAGCAAGTACCCCCAAAGGAGACTCAGAACAAGCAAATTTGTAGCAGAAGTCGCACCAAGGTTCAAATGCAGGGGGTTGCAGTGGGTCGCGCCGTGGATTTGACAACGTTGGATGGGTATAATCAACTTATTGATGAGTTAGAAGAGCTTTTCGACATAAAGGGACAGCTTCAAGTCAGAAATAAGTGGGAAATTGTCTTCACTGATGATGAAGGGGATATGATGCTTGTGGGAGATGATCCATGGCCTGAATTCTGTAATATGGTGAGAAGAATCTTCATTTGTTCCAGCCAGGATGTGAAGAAGATGAGTTCAGGAAGCAAACTTCCAATCTCTTCAATCGAAGAAGGGACTGTAATTAGCTCAGACACAACTGAAACCTGA 2025 0.4449 MLNRGSNVSAEGVVCSGEDELYVQQWKACAGPLVDVPGVGQRVFYFPQGHTEQLEVSTNQELNQRIPLLKLPTKILCRVVNVHLLAEQETDEVYAQITLVPESNILMEQMYQQAEPTSSDPCTAEPPRATVHSFCKVLTASDTSTHGGFSVLRKHATECLPALDMSQPTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGENGELRVGVRRLARQPSSLPSSVISSQSMHLGVLATASHAVSTQTLFVVYYKPRTSQFIISVNRYLEAINNKFSVGMRFKMRFEGDDSTENDKRFSGTVVGVEDISPYWVDSKWRSLKVQWDEAAAVTRPDRVSPWEIEPFVASALTPSIQPTVVKTKRPRPPSEIPDVDTTSAASVFWDAGRTDMSSKSNSNTILRNTTEGSWLSSPNSSCPSHLIQDTTDDSKSVSAWPVSNPQSSRLNNNPVLVDQVDKENKIETATSYRLFGIELIDHSRNSPAVEKASTHAVNVPRVITTEGYVSAVSRIDAGHKSDVSKASKERKQEQQQVPPKETQNKQICSRSRTKVQMQGVAVGRAVDLTTLDGYNQLIDELEELFDIKGQLQVRNKWEIVFTDDEGDMMLVGDDPWPEFCNMVRRIFICSSQDVKKMSSGSKLPISSIEEGTVISSDTTET 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3201g00009 674 Gene3D - 131 235 IPR015300 -
Gabi3201g00009 674 Gene3D - 295 369 - -
Gabi3201g00009 674 FunFam Auxin response factor 132 236 - -
Gabi3201g00009 674 SMART B3_2 134 236 IPR003340 GO:0003677
Gabi3201g00009 674 MobiDBLite consensus disorder prediction 532 563 - -
Gabi3201g00009 674 MobiDBLite consensus disorder prediction 532 549 - -
Gabi3201g00009 674 FunFam Auxin response factor 295 368 - -
Gabi3201g00009 674 Pfam B3 DNA binding domain 134 234 IPR003340 GO:0003677
Gabi3201g00009 674 SUPERFAMILY DNA-binding pseudobarrel domain 125 263 IPR015300 -
Gabi3201g00009 674 MobiDBLite consensus disorder prediction 423 465 - -
Gabi3201g00009 674 ProSiteProfiles B3 DNA-binding domain profile. 134 236 IPR003340 GO:0003677
Gabi3201g00009 674 Pfam AUX/IAA family 609 647 IPR033389 -
Gabi3201g00009 674 Pfam AUX/IAA family 541 599 IPR033389 -
Gabi3201g00009 674 ProSiteProfiles PB1 domain profile. 563 644 IPR000270 GO:0005515
Gabi3201g00009 674 FunFam Auxin response factor 558 651 - -
Gabi3201g00009 674 CDD B3_DNA 132 234 IPR003340 GO:0003677
Gabi3201g00009 674 Gene3D - 559 651 - -
Gabi3201g00009 674 Pfam Auxin response factor 260 341 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Gabi3201g00009 674 SUPERFAMILY CAD & PB1 domains 564 639 - -
Gabi3201g00009 674 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 20 651 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3201g00009 Gabi-Chr3201 71704 76157 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3201g00009 17 656 B3 DNA Binding Superfamily AT4G23980 59.535 0.0 716
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gabi3201g00009 B3 5.3e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3201g00009 K14486 - gmx:100803911 1113.21