Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3201g00002 ATGGGAGATAATAACAATGTCAACCTTCCACCCGGGTTTCGTTTTCATCCCACAGATGAAGAACTTGTAGTCCATTTCCTTCATAGAAAGGCATCACTTTTACCTTGCCACCCAGATGTCATTCCTGATCTTGAGCTCTACTCATATGATCCATGGGAACTTGATGGTAGAGCTTTGGCAGAGGGAAAACAATGGTACTACTATAGCAGAAGGACACAAAATAGGATCACTGACAATGGGTATTGGAAACCAACAGGAATGGAAGAACCAATTGTTACAACCACAAACAACAAGAGAGTTGGCATGAAGAAATGTTTTGTGTTCCATGTCGGAGAAGCACCTTCTGGTATCAAAACCAATTGGATAATGCAAGAATATCGTCTACCAGATTCTGCTTCTTCCTCTAGCAGATCATCCAAAAGAAAATCACAACCAAAAACAGATTATAATAAATGGGTGATATGTCGTGTTTATGAGCGGAATGGAGATGATGATGATGGAACAGAGCTCTCTTGTTTGGATGAAGTTTTCTTGTCATTGGACGATCTTGACGAAATAAGCTTACCGAATTATAACTAG 579 0.399 MGDNNNVNLPPGFRFHPTDEELVVHFLHRKASLLPCHPDVIPDLELYSYDPWELDGRALAEGKQWYYYSRRTQNRITDNGYWKPTGMEEPIVTTTNNKRVGMKKCFVFHVGEAPSGIKTNWIMQEYRLPDSASSSSRSSKRKSQPKTDYNKWVICRVYERNGDDDDGTELSCLDEVFLSLDDLDEISLPNYN 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3201g00002 192 SUPERFAMILY NAC domain 6 159 IPR036093 GO:0003677|GO:0006355
Gabi3201g00002 192 Pfam No apical meristem (NAM) protein 10 128 IPR003441 GO:0003677|GO:0006355
Gabi3201g00002 192 Gene3D NAC domain 18 164 IPR036093 GO:0003677|GO:0006355
Gabi3201g00002 192 PANTHER NAC TRANSCRIPTION FACTOR 56 9 165 - -
Gabi3201g00002 192 ProSiteProfiles NAC domain profile. 9 160 IPR003441 GO:0003677|GO:0006355
Gabi3201g00002 192 FunFam NAC domain-containing protein 104 18 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3201g00002 Gabi-Chr3201 19260 20126 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3201g00002 1 175 NAC Transcription Factor Family AT1G61110 42.708 1.12e-46 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gabi3201g00002 NAM 2.7e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3201g00002 - - gmx:100170712 348.977