Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3200g00005 ATGGTGCATGTAAATGAAAATGCCAGAAAACGTCCATCTGAGTACGTTGACAACAAATCTTTGTGGAAAAAAATGAAAACCAATTCGAAAAGCAAAAACACATTCTTGGAATCGAAATGGCATCAAGTAAGAGAAGCTTCAGAGATAATCCCTCGGCACAAATTGCACATGCCTATCAGGAGAAATCAGAAGCTTAGCGATAAAGTTACAACTCTACAAAAGTTGGTTTCACCTTTTGGCAAGACTGACACTGCATCAGTTCTTCATGAGGCTTCTCTTTATATCAAGCTTCTTCAAGCACAAATCTGGAATTTGTTTCAGATGCTAAGTGTCTCTTACATTAGTAAGGCTGAAGCCCCTCATACTCAGGGATGTGGGCACAAAGTGCAGGTTGACTAA 399 0.396 MVHVNENARKRPSEYVDNKSLWKKMKTNSKSKNTFLESKWHQVREASEIIPRHKLHMPIRRNQKLSDKVTTLQKLVSPFGKTDTASVLHEASLYIKLLQAQIWNLFQMLSVSYISKAEAPHTQGCGHKVQVD 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3200g00005 132 CDD bHLH_AtbHLH_like 60 102 IPR045239 -
Gabi3200g00005 132 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 49 98 IPR011598 GO:0046983
Gabi3200g00005 132 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 58 115 - -
Gabi3200g00005 132 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 60 108 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3200g00005 Gabi-Chr3200 15458 20894 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3200g00005 45 102 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G21340 54.688 6.11e-15 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3200g00005 - - ccaj:109812405 164.466