Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3200g00001 ATGTCGAACGGCATGGGATTTCAGGAGCAGCATTCGAACCACAACGCAGCAACGATGATGCGCGGGAATGTCTCCATGACCCAAAAACAAATCGAGACTCTGAGGATACAAATCGCTGCTTACGAAACCCTCTCTGAACAACTCGCTGAGAAGTACAGGGCACACCATGCCGCTCGCCAAGCTTCTCCTCAAGTTGTAACAAATATACTGAAACAAATGGGTGTGGTGTTTTCAGTGACGTCAGAGGTGGTTAAGCCGGTAAATATGTATGGAGGAGACACATCAAAGGGAATATTTAACATGAAGCCGAGGTGGAGTCCAACAACTGAGCAGCTTCAGATCATGGAGAAAATATTTAAGCAGGTGACACCGAATCCAGACAGGAAAATGATAAACGAGATTACTGCGGAACTCGCCAATCATGGAAATATTTCAGAGAAAAATGTCTGTAATTGGTTCCAGAATAAGCGTGCTCGGTCTAGCCGCTATCAAATGAAATAA 501 0.4491 MSNGMGFQEQHSNHNAATMMRGNVSMTQKQIETLRIQIAAYETLSEQLAEKYRAHHAARQASPQVVTNILKQMGVVFSVTSEVVKPVNMYGGDTSKGIFNMKPRWSPTTEQLQIMEKIFKQVTPNPDRKMINEITAELANHGNISEKNVCNWFQNKRARSSRYQMK 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3200g00001 166 Pfam Homeodomain 102 160 IPR001356 GO:0003677
Gabi3200g00001 166 SUPERFAMILY Homeodomain-like 101 163 IPR009057 -
Gabi3200g00001 166 Coils Coil 31 51 - -
Gabi3200g00001 166 PANTHER WUSCHEL-RELATED HOMEOBOX 13 8 164 IPR044559 GO:0003700
Gabi3200g00001 166 ProSiteProfiles 'Homeobox' domain profile. 98 163 IPR001356 GO:0003677
Gabi3200g00001 166 SMART HOX_1 100 166 IPR001356 GO:0003677
Gabi3200g00001 166 Gene3D - 103 166 - -
Gabi3200g00001 166 CDD homeodomain 102 162 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3200g00001 Gabi-Chr3200 309 1004 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3200g00001 26 164 Wox Gene Family AT1G20700 37.410 3.39e-25 94.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Gabi3200g00001 Homeodomain 1e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3200g00001 - - ppp:112286956 104.375