Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi31g00004 ATGGCTTCTCCTTTACCTCTTTATCAGCCAACACAACGCTTCTTCTCCAACACCCAGTTCAAAGGTTCGCACCGTGTCTGCTTTTGCCGACCCACTTACTCATTTGGCTCTCATGCTATTGCTGAAAACAAAGCACGACCTATTATTAAAGCCTCGGTTGATGCACCCCAATTTCCCTTGTTTCAGCCTCCAAAAGTTGAAGAGTCATCATCATCTGAGTTGGAGCCTGCAGATCCTGATTTCTACAAGATAGGTTATGTCCGAAGAATGCGAGCTTATGGAGTTGAGTTTAAGGAAGGGCCAGATGGTTTTGGTGTGTATGCTTCCAAAGATGTAGAACCTCTTAAGCGAGCTAGGGTTATAATGGAAATACCTCTTGAATTGATGTTGACCATAAGCAAGAGGCTCCCGTGGATGTTTTTCCCTGATATAATTCCCATAGGTCATCCAATATTTGATATTATCAACTCGACAAATCCGGAGACAGATTGGGACTTAAGGTTAGCATGCCTTCTCTTATTTTCATTTGACTGCGACGACAACTTTTGGCAGTTGTATGGTGATTTCTTACCAAGCGCAGATGAGTGTTCTAGCTTACTTCTAGCTAAAGAGGAGGAACTTTTGGAGCTGCAGGATCCCAGTCTTGCTTCTACTATGAGAAACCAGCAACAACGAGCCTTAGAATTTTGGGAGAATAACTGGCACAGTGATGCACCCCTTAAAATAAAGCGTCTTGCTCGTGATCCTCAAAGGTTCATTTGGGCTGTAGGTATTGCACAATCACGATGTATTAACATGCAAATAAGAGTTGGTGCACTAAATCAGGAAGCAAATATGCTGATTCCTTATGCTGACATGCTAAACCATTCATTTGAGCCAAATTGTTTTTTGCATTGGCGTTTTAAGGACCGGATGCTTGAGGTTCTTACAAATGCTGGGCAGCGGATTAGAAAAGGAGATGAGATGACAATTAATTATATGAGTGGACAGAAGAATGACATGTTAATGCAAAGATATGGATTTTCATCACCTGTGAACCCTTGGGATGTGATCAATTTCTCAGGCAATGCACGTATTCATTTGGATTCTTTCTTGTCAGTCTTCAATATATCTGAACTTCCTGAAGAGTATTACCATAACAATGGAGCAGTCATAGCTGCGGCACGAACCTTGCCAACTTGGTCAGATGGGGATGTACCTCCAATCCCTAGTGTGGAAAGAAAGGCTGTGAAAGAGTTAAAAGGAGAATGCCAACAGATGCTTGCAGAATTTGCTACAACCTCTAAGCAAGACCAGAAAGCGCTGGATTCCATGCCAGAAGCTACGAGGACACTTGAAGCTGCAATAAAGTATAGATTGCACCGGAAATTGTTCATTGAAAAAGTTATCCAAGCATTGGAGATTTATCAAGAGAAAATACTGTTCTGA 1428 0.4195 MASPLPLYQPTQRFFSNTQFKGSHRVCFCRPTYSFGSHAIAENKARPIIKASVDAPQFPLFQPPKVEESSSSELEPADPDFYKIGYVRRMRAYGVEFKEGPDGFGVYASKDVEPLKRARVIMEIPLELMLTISKRLPWMFFPDIIPIGHPIFDIINSTNPETDWDLRLACLLLFSFDCDDNFWQLYGDFLPSADECSSLLLAKEEELLELQDPSLASTMRNQQQRALEFWENNWHSDAPLKIKRLARDPQRFIWAVGIAQSRCINMQIRVGALNQEANMLIPYADMLNHSFEPNCFLHWRFKDRMLEVLTNAGQRIRKGDEMTINYMSGQKNDMLMQRYGFSSPVNPWDVINFSGNARIHLDSFLSVFNISELPEEYYHNNGAVIAAARTLPTWSDGDVPPIPSVERKAVKELKGECQQMLAEFATTSKQDQKALDSMPEATRTLEAAIKYRLHRKLFIEKVIQALEIYQEKILF 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi31g00004 475 CDD SET_LSMT 94 341 - -
Gabi31g00004 475 ProSiteProfiles SET domain profile. 93 327 IPR001214 GO:0005515
Gabi31g00004 475 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 338 468 IPR036464 -
Gabi31g00004 475 Pfam SET domain 103 326 IPR001214 GO:0005515
Gabi31g00004 475 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 70 443 - -
Gabi31g00004 475 Gene3D set domain protein methyltransferase, domain 1 87 341 - -
Gabi31g00004 475 SUPERFAMILY SET domain 102 342 IPR046341 -
Gabi31g00004 475 FunFam Protein PLASTID TRANSCRIPTIONALLY ACTIVE 14 87 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi31g00004 Gabi-Chr31 7540 20883 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gabi31g00004 SET 8.5e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi31g00004 - - gmx:100790985 815.453