Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi31g00003 ATGGCTTCTCCTTTACCTCTTTATCAGCCAACACAACGCTTCTTCTCCAACACCCAGTTCAAAGGTTCGCACCGTGTCTGCTTTTGCCGACCCACTTACTCATTTGGCTCTCATGCTATTGCTGAAAACAAAGCACGACCTATTATTAAAGCCTCGGTTGATGCACCCCAATTTCCCTTGTTTCAGCCTCCAAAAGTTGAAGAGTCATCATCATCTGAGTTGGAGCCTGCAGATCCTGATTTCTACAAGATAGGTTATGTCCGAAGAATGCGAGCTTATGGAGTTGAGTTTAAGGAAGGGCCAGATGGTTTTGGTGTGTATGCTTCCAAAGATGTAGAACCTCTTAAGCGAGCTAGGGTTATAATGGAAATACCTCTTGAATTGATGTTGACCATAAGCAAGAGGCTCCCGTGGATGTTTTTCCCTGATATAATTCCCATAGGTCATCCAATATTTGATATTATCAACTCGACAAATCCGGAGACAGATTGGGACTTAAGGTTAGCATGCCTTCTCTTATTTTCATTTGACTGCGACGACAACTTTTGGCAGTTGTATGGTGATTTCTTACCAAGCGCAGATGAGTGTTCTAGCTTACTTCTAGCTAAAGAGGAGGAACTTTTGGAGCTGCAGGATCCCAGTCTTGCTTCTACTATGAGAAACCAGCAACAACGAGCCTTAGAATTTTGGGAGAATAACTGGCACAGTGATGCACCCCTTAAAATAAAGCGTCTTGCTCGTGATCCTCAAAGGTTCATTTGGGCTGTAGGTATTGCACAATCACGATGTATTAACATGCAAATAAGAGTTGGTGCACTAAATCAGGAAGCAAATATGCTGATTCCTTATGCTGACATGCTAAACCATTCATTTGAGCCAAATTGTTTTTTGCATTGGCGTTTTAAGGACCGGATGCTTGAGGTTCTTACAAATGCTGGGCAGCGGATTAGAAAAGGAGATGAGATGACAATTAATTATATGAGTGGACAGAAGAATGACATGTTAATGCAAAGATATGGATTTTCATCACCTGTGAACCCTTGGGATGTGATCAATTTCTCAGGCAATGCACGTATTCATTTGGATTCTTTCTTGTCAGTCTTCAATATATCTGAACTTCCTGAAGAGTATTACCATAACAGCTGTCTATCAAACACTGGAGATACTTTTGTAGATGGAGCAGTCATAGCTGCGGCACGAACCTTGCCAACTTGGTCAGATGGGGATGTACCTCCAATCCCTAGTGTGGAAAGAAAGGCTGTGAAAGAGTTAAAAGGAGAATGCCAACAGATGCTTGCAGAATTTGCTACAACCTCTAAGCAAGACCAGAAAGCGCTGGATTCCATGCCAGAAGCTACGAGGACACTTGAAGCTGCAATAAAGTATAGATTGCACCGGAAATTGTTCATTGAAAAAGTTATCCAAGCATTGGAGATTTATCAAGAGAAAATACTGTTCTGA 1461 0.4189 MASPLPLYQPTQRFFSNTQFKGSHRVCFCRPTYSFGSHAIAENKARPIIKASVDAPQFPLFQPPKVEESSSSELEPADPDFYKIGYVRRMRAYGVEFKEGPDGFGVYASKDVEPLKRARVIMEIPLELMLTISKRLPWMFFPDIIPIGHPIFDIINSTNPETDWDLRLACLLLFSFDCDDNFWQLYGDFLPSADECSSLLLAKEEELLELQDPSLASTMRNQQQRALEFWENNWHSDAPLKIKRLARDPQRFIWAVGIAQSRCINMQIRVGALNQEANMLIPYADMLNHSFEPNCFLHWRFKDRMLEVLTNAGQRIRKGDEMTINYMSGQKNDMLMQRYGFSSPVNPWDVINFSGNARIHLDSFLSVFNISELPEEYYHNSCLSNTGDTFVDGAVIAAARTLPTWSDGDVPPIPSVERKAVKELKGECQQMLAEFATTSKQDQKALDSMPEATRTLEAAIKYRLHRKLFIEKVIQALEIYQEKILF 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi31g00003 486 CDD SET_LSMT 94 341 - -
Gabi31g00003 486 ProSiteProfiles SET domain profile. 93 327 IPR001214 GO:0005515
Gabi31g00003 486 SUPERFAMILY SET domain 102 342 IPR046341 -
Gabi31g00003 486 Gene3D - 362 484 IPR036464 -
Gabi31g00003 486 FunFam Plastid transcriptionally active 14 363 483 - -
Gabi31g00003 486 Gene3D set domain protein methyltransferase, domain 1 87 341 - -
Gabi31g00003 486 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 338 479 IPR036464 -
Gabi31g00003 486 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 70 454 - -
Gabi31g00003 486 FunFam Protein PLASTID TRANSCRIPTIONALLY ACTIVE 14 87 341 - -
Gabi31g00003 486 Pfam SET domain 103 326 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi31g00003 Gabi-Chr31 7540 20883 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gabi31g00003 SET 9e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi31g00003 - - gmx:100790985 839.721