LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi31g00002	ATGGCTTCTCCTTTACCTCTTTATCAGCCAACACAACGCTTCTTCTCCAACACCCAGTTCAAAGGTTCGCACCGTGTCTGCTTTTGCCGACCCACTTACTCATTTGGCTCTCATGCTATTGCTGAAAACAAAGCACGACCTATTATTAAAGCCTCGGTTGATGCACCCCAATTTCCCTTGTTTCAGCCTCCAAAAGTTGAAGAGTCATCATCATCTGAGTTGGAGCCTGCAGATCCTGATTTCTACAAGATAGGTTATGTCCGAAGAATGCGAGCTTATGGAGTTGAGTTTAAGGAAGGGCCAGATGGTTTTGGTGTGTATGCTTCCAAAGATGTAGAACCTCTTAAGCGAGCTAGGGTTATAATGGAAATACCTCTTGAATTGATGTTGACCATAAGCAAGAGGCTCCCGTGGATGTTTTTCCCTGATATAATTCCCATAGGTCATCCAATATTTGATATTATCAACTCGACAAATCCGGAGACAGATTGGGACTTAAGGTTAGCATGCCTTCTCTTATTTTCATTTGACTGCGACGACAACTTTTGGCAGTTGTATGGTGATTTCTTACCAAGCGCAGATGAGTGTTCTAGCTTACTTCTAGCTAAAGAGGAGGAACTTTTGGAGCTGCAGGATCCCAGTCTTGCTTCTACTATGAGAAACCAGCAACAACGAGCCTTAGAATTTTGGGAGAATAACTGGCACAGTGATGCACCCCTTAAAATAAAGCGTCTTGCTCGTGATCCTCAAAGGTTCATTTGGGCTGTAGGTATTGCACAATCACGATGTATTAACATGCAAATAAGAGTTGGTGCACTAAATCAGGAAGCAAATATGCTGATTCCTTATGCTGACATGCTAAACCATTCATTTGAGCCAAATTGTTTTTTGCATTGGCGTTTTAAGGACCGGATGCTTGAGGTTCTTACAAATGCTGGGCAGCGGATTAGAAAAGGAGATGAGATGACAATTAATTATATGAGTGGACAGAAGAATGACATGTTAATGCAAAGATATGGATTTTCATCACCTGTGAACCCTTGGGATGTGATCAATTTCTCAGGCAATGCACGTATTCATTTGGATTCTTTCTTGTCAGTCTTCAATATATCTGAACTTCCTGAAGAGTATTACCATAACACAGGCTGTCTATCAAACACTGGAGATACTTTTGTAGATGGAGCAGTCATAGCTGCGGCACGAACCTTGCCAACTTGGTCAGATGGGGATGTACCTCCAATCCCTAGTGTGGAAAGAAAGGCTGTGAAAGAGTTAAAAGGAGAATGCCAACAGATGCTTGCAGAATTTGCTACAACCTCTAAGCAAGACCAGAAAGCGCTGGATTCCATGCCAGAAGCTACGAGGACACTTGAAGCTGCAATAAAGTATAGATTGCACCGGAAATTGTTCATTGAAAAAGTTATCCAAGCATTGGAGATTTATCAAGAGAAAATACTGTTCTGA	1464	0.4194	MASPLPLYQPTQRFFSNTQFKGSHRVCFCRPTYSFGSHAIAENKARPIIKASVDAPQFPLFQPPKVEESSSSELEPADPDFYKIGYVRRMRAYGVEFKEGPDGFGVYASKDVEPLKRARVIMEIPLELMLTISKRLPWMFFPDIIPIGHPIFDIINSTNPETDWDLRLACLLLFSFDCDDNFWQLYGDFLPSADECSSLLLAKEEELLELQDPSLASTMRNQQQRALEFWENNWHSDAPLKIKRLARDPQRFIWAVGIAQSRCINMQIRVGALNQEANMLIPYADMLNHSFEPNCFLHWRFKDRMLEVLTNAGQRIRKGDEMTINYMSGQKNDMLMQRYGFSSPVNPWDVINFSGNARIHLDSFLSVFNISELPEEYYHNTGCLSNTGDTFVDGAVIAAARTLPTWSDGDVPPIPSVERKAVKELKGECQQMLAEFATTSKQDQKALDSMPEATRTLEAAIKYRLHRKLFIEKVIQALEIYQEKILF	487

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi31g00002	487	CDD	SET_LSMT	94	341	-	-
	Gabi31g00002	487	Gene3D	-	362	485	IPR036464	-
	Gabi31g00002	487	SUPERFAMILY	RuBisCo LSMT C-terminal, substrate-binding domain	338	480	IPR036464	-
	Gabi31g00002	487	Gene3D	set domain protein methyltransferase, domain 1	87	341	-	-
	Gabi31g00002	487	ProSiteProfiles	SET domain profile.	93	327	IPR001214	GO:0005515
	Gabi31g00002	487	PANTHER	UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE	70	455	-	-
	Gabi31g00002	487	SUPERFAMILY	SET domain	102	342	IPR046341	-
	Gabi31g00002	487	FunFam	Protein PLASTID TRANSCRIPTIONALLY ACTIVE 14	87	341	-	-
	Gabi31g00002	487	Pfam	SET domain	103	326	IPR001214	GO:0005515
	Gabi31g00002	487	FunFam	Plastid transcriptionally active 14	363	484	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi31g00002	Gabi-Chr31	7540	20883	Tandem

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	SET	Gabi31g00002		SET	9.1e-19	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi31g00002	-		-	gmx:100790985	834.713