Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi31g00001 ATGGCTTCTCCTTTACCTCTTTATCAGCCAACACAACGCTTCTTCTCCAACACCCAGTTCAAAGGTTCGCACCGTGTCTGCTTTTGCCGACCCACTTACTCATTTGGCTCTCATGCTATTGCTGAAAACAAAGCACGACCTATTATTAAAGCCTCGGTTGATGCACCCCAATTTCCCTTGTTTCAGCCTCCAAAAGTTGAAGAGTCATCATCATCTGAGTTGGAGCCTGCAGATCCTGATTTCTACAAGATAGGTTATGTCCGAAGAATGCGAGCTTATGGAGTTGAGTTTAAGGAAGGGCCAGATGGTTTTGGTGTGTATGCTTCCAAAGATGTAGAACCTCTTAAGCGAGCTAGGGTTATAATGGAAATACCTCTTGAATTGATGTTGACCATAAGCAAGAGGCTCCCGTGGATGTTTTTCCCTGATATAATTCCCATAGGTCATCCAATATTTGATATTATCAACTCGACAAATCCGGAGGAGGAACTTTTGGAGCTGCAGGATCCCAGTCTTGCTTCTACTATGAGAAACCAGCAACAACGAGCCTTAGAATTTTGGGAGAATAACTGGCACAGTGATGCACCCCTTAAAATAAAGCGTCTTGCTCGTGATCCTCAAAGGTTCATTTGGGCTGTAGGTATTGCACAATCACGATGTATTAACATGCAAATAAGAGTTGGTGCACTAAATCAGGAAGCAAATATGCTGATTCCTTATGCTGACATGCTAAACCATTCATTTGAGCCAAATTGTTTTTTGCATTGGCGTTTTAAGGACCGGATGCTTGAGGTTCTTACAAATGCTGGGCAGCGGATTAGAAAAGGAGATGAGATGACAATTAATTATATGAGTGGACAGAAGAATGACATGTTAATGCAAAGATATGGATTTTCATCACCTGTGAACCCTTGGGATGTGATCAATTTCTCAGGCAATGCACGTATTCATTTGGATTCTTTCTTGTCAGTCTTCAATATATCTGAACTTCCTGAAGAGTATTACCATAACACAGGCTGTCTATCAAACACTGGAGATACTTTTGTAGATGGAGCAGTCATAGCTGCGGCACGAACCTTGCCAACTTGGTCAGATGGGGATGTACCTCCAATCCCTAGTGTGGAAAGAAAGGCTGTGAAAGAGTTAAAAGGAGAATGCCAACAGATGCTTGCAGAATTTGCTACAACCTCTAAGCAAGACCAGAAAGCGCTGGATTCCATGCCAGAAGCTACGAGGACACTTGAAGCTGCAATAAAGTATAGATTGCACCGGAAATTGTTCATTGAAAAAGTTATCCAAGCATTGGAGATTTATCAAGAGAAAATACTGTTCTGA 1335 0.4202 MASPLPLYQPTQRFFSNTQFKGSHRVCFCRPTYSFGSHAIAENKARPIIKASVDAPQFPLFQPPKVEESSSSELEPADPDFYKIGYVRRMRAYGVEFKEGPDGFGVYASKDVEPLKRARVIMEIPLELMLTISKRLPWMFFPDIIPIGHPIFDIINSTNPEEELLELQDPSLASTMRNQQQRALEFWENNWHSDAPLKIKRLARDPQRFIWAVGIAQSRCINMQIRVGALNQEANMLIPYADMLNHSFEPNCFLHWRFKDRMLEVLTNAGQRIRKGDEMTINYMSGQKNDMLMQRYGFSSPVNPWDVINFSGNARIHLDSFLSVFNISELPEEYYHNTGCLSNTGDTFVDGAVIAAARTLPTWSDGDVPPIPSVERKAVKELKGECQQMLAEFATTSKQDQKALDSMPEATRTLEAAIKYRLHRKLFIEKVIQALEIYQEKILF 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi31g00001 444 CDD SET_LSMT 94 298 - -
Gabi31g00001 444 Gene3D set domain protein methyltransferase, domain 1 137 298 - -
Gabi31g00001 444 Pfam SET domain 103 283 IPR001214 GO:0005515
Gabi31g00001 444 FunFam Plastid transcriptionally active 14 320 441 - -
Gabi31g00001 444 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 71 412 - -
Gabi31g00001 444 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 295 437 IPR036464 -
Gabi31g00001 444 ProSiteProfiles SET domain profile. 93 284 IPR001214 GO:0005515
Gabi31g00001 444 SUPERFAMILY SET domain 102 299 IPR046341 -
Gabi31g00001 444 Gene3D - 318 442 IPR036464 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi31g00001 Gabi-Chr31 7540 20884 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gabi31g00001 SET 9.1e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi31g00001 - - gmx:100790985 739.184