Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3198g00002 ATGCTTCTGCTTCAGGTTCAGGGTTTCAGGAAAGTTGATACGGATCGCTGGGAATTTGCCAATGACAACTTTGTTAGGGGTCAAAAGCATTTGTTGAAGAATATACGTAGAAGGAAACATCCTCACATTGCAGATCAACCAAAAGCCTTGCCGCAGCAAGGCAATTGTGATGAATCATCACAGGAAGCAACAAATTATGACCTTCAATTTTGGGAAAGAGATATTTGGGAAAGAGATATTTGGGAAAGATAG 252 0.4048 MLLLQVQGFRKVDTDRWEFANDNFVRGQKHLLKNIRRRKHPHIADQPKALPQQGNCDESSQEATNYDLQFWERDIWERDIWER 83
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3198g00002 83 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 5 61 IPR027725 -
Gabi3198g00002 83 Pfam HSF-type DNA-binding 4 38 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi3198g00002 83 SUPERFAMILY "Winged helix" DNA-binding domain 8 38 IPR036390 -
Gabi3198g00002 83 Gene3D - 3 39 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3198g00002 Gabi-Chr3198 28497 29684 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3198g00002 4 48 HSF AT1G67970 66.667 5.04e-15 66.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Gabi3198g00002 HSF_DNA-bind 3e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3198g00002 K09419 - gmx:100813694 110.923