Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3194g00018 ATGGCAGCGTCGTTGCAGAAAGTGGCACATTTGAGCACGAGCAGCGGTGCTGGCGGCACCGTTGTTGATGGTGTCGCCACCGTTCCTGCCGCGGAGTTCCCGGTTGGTCTTAGGGTTCTTGTGGTAGATGATGACGTCACTACCTTGAAGATTCTCGAGCAAATGTCCATTCGGTGCCGTTACAGCGTTACTACATGCATTGATGCTACTGCTGCTTTGAATATTCTGCGAGAGAGGAAAGACGGTTTTGATGTGGTACTGAGTGATGTTCATATGCCGAAAATGGATGGTTATAAACTCCTTGAACATGTTGGGCTGGAAATGAATCTTCCTGTTATCATGATGTCTGCTGATGGTAGAACAAGTGCTGTCATGAAAGGAATTAAGCATGGGGCTTGTGATTATTTGATTAAGCCTGTACGTGAGGAAGAACTAAAGAATATATGGCAGCATGTTGTAAGGAAACTTTGCAAAGAAAATAAAGAACATGAAAATTCTGGTGTCATGGAAGATAATAATGATAGGAATAAATGGGGAAATGATGATGCTGAATATACTTCTCCTGTTGTTGATGCAACAGAAGGAATAGTTAAAACACAAAGAAAGAGGAGCAGTATGAATGAAGAAGAAGATGCTGAGTTGGAAAATGATGATTCATCTACATCTAAGAAGCCCCGTGTGGTGTGGTCGGTAGAACTCCATCAACAATTTGTCAGCGCTGTGAATCAGCTAGGGCTTGACAAGGCTGTGCCAAAGAGAATACTTGAATTGATGAATGTCCCTGGTTTGACAAGAGAAAATGTTGCAAGTCATTTGCAGAAATTTAGACTTTATTTGAAGCGATTAAATAGTGTGGCACAGCAACAGAATGGGATGCTAAACACATTTCCTGGGACTATAGAATCCAAGCTGTGTACTCCTGGAAGATTTGACATACAAGCTTGGGCTGCTGCTGGCCATGTTCCCCCTGAAACACTTGCAGCCCTTCATGCTGAGCTCTTAGGTCACCCAACAACTAACATAATGCCTACAGTGGACCAGACTACTCTACTGCAAGCATCCATACAGAGGCCAAAACATTTGCATGCTGAACATGCTGTGGCATATGGTCAGTCTCTTGTAAAAGGTCCTTCCAACATTGCCAAGAATTTTCCTCAGTCTGTCTCAACTGTAGATGATACATCATCAAGATATGCAGCATGGCCATCATCTAATACAATTGATTCAGTGGGACCCAATAGTAGTGTTGGAAGGGTGGGTGTTCAGAATAATAACATGCTGATGGATATATTGCAGCATCAACAAAGGCAGCAGCACCAGCAGAAACAACACCAACAGCTGCAGCAGCAGTCACTGATACAAGATCAAAGTCGATCGATCAATGTTCAACCATCTTGCTTGGTTGTTCCCTCTCAATCTTCAAACAATTTCCAGGTAGGAAATAGTCATGCTTCTGTCAACCAGGATTGCAGTTTTGGAAGGAATGCCATTATTGACTATAGTCTATTGTCACCAAAATCAAATAATTCATTTAGTATATCGCAATTTTCTGTTGGGGACACCAAAGCTAGAGACGTTCTCTGTGGGTATACTATGCCTTGCGTTTCTCCTCAAACGTCCTCTTGTTCAATAGGCTCCGGCAATAGCAATATTCAGCAGCTTCAAAATTCAACTTTGACATTTGATGCTGTGAGACCTTTGCCTGGCCTCCTGCCTGTGTCTGATAGACAAGTTCCCTATGATATTAAATCTGGTGATTCAGTTGATCAAGCATGTCTTAGGAATCTTGGATTTGTTGGCAAAGGTACCTACATTCCAAATAGGTTTCTGGAAAATGAAATTGAATCATCTGTAAATGATTTTAGACAAATGAAAGTCTCCGGAGATAGCAATGGTAACACACAGAAGGAGGAGCCAAATTTTACAAGTAATCCAAAAGCGAGCCACCCAGTCTTACAAAGATATCCATCTCGTGATCATTGA 1983 0.4221 MAASLQKVAHLSTSSGAGGTVVDGVATVPAAEFPVGLRVLVVDDDVTTLKILEQMSIRCRYSVTTCIDATAALNILRERKDGFDVVLSDVHMPKMDGYKLLEHVGLEMNLPVIMMSADGRTSAVMKGIKHGACDYLIKPVREEELKNIWQHVVRKLCKENKEHENSGVMEDNNDRNKWGNDDAEYTSPVVDATEGIVKTQRKRSSMNEEEDAELENDDSSTSKKPRVVWSVELHQQFVSAVNQLGLDKAVPKRILELMNVPGLTRENVASHLQKFRLYLKRLNSVAQQQNGMLNTFPGTIESKLCTPGRFDIQAWAAAGHVPPETLAALHAELLGHPTTNIMPTVDQTTLLQASIQRPKHLHAEHAVAYGQSLVKGPSNIAKNFPQSVSTVDDTSSRYAAWPSSNTIDSVGPNSSVGRVGVQNNNMLMDILQHQQRQQHQQKQHQQLQQQSLIQDQSRSINVQPSCLVVPSQSSNNFQVGNSHASVNQDCSFGRNAIIDYSLLSPKSNNSFSISQFSVGDTKARDVLCGYTMPCVSPQTSSCSIGSGNSNIQQLQNSTLTFDAVRPLPGLLPVSDRQVPYDIKSGDSVDQACLRNLGFVGKGTYIPNRFLENEIESSVNDFRQMKVSGDSNGNTQKEEPNFTSNPKASHPVLQRYPSRDH 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3194g00018 660 Pfam Response regulator receiver domain 39 147 IPR001789 GO:0000160
Gabi3194g00018 660 MobiDBLite consensus disorder prediction 624 650 - -
Gabi3194g00018 660 MobiDBLite consensus disorder prediction 163 185 - -
Gabi3194g00018 660 SUPERFAMILY CheY-like 36 185 IPR011006 -
Gabi3194g00018 660 MobiDBLite consensus disorder prediction 624 660 - -
Gabi3194g00018 660 PANTHER TWO-COMPONENT RESPONSE REGULATOR 37 435 IPR045279 GO:0009736
Gabi3194g00018 660 ProSiteProfiles Response regulatory domain profile. 38 153 IPR001789 GO:0000160
Gabi3194g00018 660 FunFam Two-component response regulator 37 174 - -
Gabi3194g00018 660 Gene3D - 220 283 - -
Gabi3194g00018 660 CDD REC_typeB_ARR-like 39 153 - -
Gabi3194g00018 660 MobiDBLite consensus disorder prediction 197 223 - -
Gabi3194g00018 660 NCBIfam myb-like DNA-binding domain, SHAQKYF class 224 277 IPR006447 GO:0003677
Gabi3194g00018 660 Coils Coil 430 450 - -
Gabi3194g00018 660 SMART REC_2 37 149 IPR001789 GO:0000160
Gabi3194g00018 660 SUPERFAMILY Homeodomain-like 221 281 IPR009057 -
Gabi3194g00018 660 MobiDBLite consensus disorder prediction 433 452 - -
Gabi3194g00018 660 FunFam Two-component response regulator 220 283 - -
Gabi3194g00018 660 Pfam Myb-like DNA-binding domain 226 274 IPR001005 -
Gabi3194g00018 660 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 221 280 IPR017930 -
Gabi3194g00018 660 MobiDBLite consensus disorder prediction 163 181 - -
Gabi3194g00018 660 Gene3D - 37 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3194g00018 Gabi-Chr3194 356219 361726 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3194g00018 72 337 Response Regulator Gene Family AT3G16857 54.965 2.41e-92 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Gabi3194g00018 Response_reg 1.2e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3194g00018 - K14491 gmx:100817125 889.412