Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3194g00013 ATGCAAAAAATGGATCAGTGGAAGCCGCAAGACTTATCCAAAACTGCATCTGCTGCAGCAGATTCTGCCCCTCAACCCGTCACTGTCACCTCTAACCGCTTCCACAACAACTCCAACCAACAAATTGTGAGGGAGAGGGTTCATGAGGATCCTAGTGCTGCAAGAAAAGTTCAGAAAGCAGACCGCGAGAAATTGAGGAGGGGTCGACTAAATGATCAGTTCCATGAACTGGGAAACACGTTAGATCCTGATAGACCAAGGAATGACAAGGCAACTATCCTTAATGAGACAATCCAAATGATTAAGGACTTAAGTGCCCAAGTTAATAGACTGAAAATGGAGCATAAAGCACTTTCTGAAGAGTCACGTGAACTAATGCAAGAAAAGAATGAACTCAGAGAAGAGAAGGCCTCCTTGAAATCTGATATAGAAAATCTGAATACCCAGTATCAGCAGAGAGTTAGAACCATGTTCCCATGGACTTCAATTGACCATTCTGTTGTTATGAGTTCACCTTATTCATATCCAGTTCCTATACCCATCCCTTCAGCTCCAATTTCCATTCACCCATCTCTTCAACCTTTTCCTATCTTTGGAAATCAATATGTCCCATTCTCAGCTCCAGCTAACCCCCCAGTTGAGTATGCTTCCACGTCGTCCCACGTGTCTACCCAAATTGAATCCGGAAGCAAGTCACCCGGTCATAGAAGGCCTGGTGATGCCAAAAGATGTAGTGAGTCTCACGAAGTGGCTACAGAGCTTGAACTTAAGATGCCCGGATCATCAGCAGATCAGAGTTGCACTTCTGGAGGAAGGAAGGGCAAGCATTCAGTAATGGAGGATAGAGTTGTTATCGATGAGAGTGCTTCAAGCCGGTATTCTCCATCTCAAGGACTTCAAGATAGCTCCAGCAGCGTGGGTGATATTCCAAAGCCTGATAATTAA 945 0.4466 MQKMDQWKPQDLSKTASAAADSAPQPVTVTSNRFHNNSNQQIVRERVHEDPSAARKVQKADREKLRRGRLNDQFHELGNTLDPDRPRNDKATILNETIQMIKDLSAQVNRLKMEHKALSEESRELMQEKNELREEKASLKSDIENLNTQYQQRVRTMFPWTSIDHSVVMSSPYSYPVPIPIPSAPISIHPSLQPFPIFGNQYVPFSAPANPPVEYASTSSHVSTQIESGSKSPGHRRPGDAKRCSESHEVATELELKMPGSSADQSCTSGGRKGKHSVMEDRVVIDESASSRYSPSQGLQDSSSSVGDIPKPDN 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3194g00013 314 Coils Coil 94 149 - -
Gabi3194g00013 314 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 54 104 IPR011598 GO:0046983
Gabi3194g00013 314 Pfam Helix-loop-helix DNA-binding domain 55 104 IPR011598 GO:0046983
Gabi3194g00013 314 MobiDBLite consensus disorder prediction 214 314 - -
Gabi3194g00013 314 MobiDBLite consensus disorder prediction 42 88 - -
Gabi3194g00013 314 MobiDBLite consensus disorder prediction 214 231 - -
Gabi3194g00013 314 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 52 124 IPR036638 GO:0046983
Gabi3194g00013 314 MobiDBLite consensus disorder prediction 1 88 - -
Gabi3194g00013 314 CDD bHLH_AtILR3_like 59 133 - -
Gabi3194g00013 314 Gene3D - 52 130 IPR036638 GO:0046983
Gabi3194g00013 314 PANTHER TRANSCRIPTION FACTOR BHLH121 18 309 IPR044579 GO:0003700|GO:0006879
Gabi3194g00013 314 SMART finulus 60 110 IPR011598 GO:0046983
Gabi3194g00013 314 MobiDBLite consensus disorder prediction 6 41 - -
Gabi3194g00013 314 MobiDBLite consensus disorder prediction 289 314 - -
Gabi3194g00013 314 MobiDBLite consensus disorder prediction 233 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3194g00013 Gabi-Chr3194 258799 261490 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3194g00013 53 265 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G19860 50.439 7.52e-65 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi3194g00013 HLH 3.8e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3194g00013 - - gmx:100818281 382.104