Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3194g00002 ATGGAGAAATTCCAACCGGGTTTTGGTCTTTGCCTTGTTCTGGTGTTTGCTATGATGTTTCATTGTGCTTGGTCTCAGGATGATGCTGTTGTCATGGGCACGTTAAAGAAAGCTATCAATGAACCCGATGGTCTCCAATGGTCAGACCCAGATGTATGTAAATGGAATCATGTTCAGTGCAATTCAATGAAAAGGGTCACTGCTATTCAAATTGCGAAGCTGAATATTCAAGGCTCTCTCCCAAAAGAACTGGTGCAACTCACCGAGTTGACACGTTTTGAGTGCATGAACAATGCTCTCACAGGGCCATTCCCTTACATGCCGAAGTCCTTGCAGAATCTGATTATCCATGACAACAATTTCAGTTCCATACCAAGTGATTTCTTCATCAAAATGACCAATTTGCAAGAGGTGAGAATCGACTATAACCCCTTCAATAAGTGGCAGGTTCCTTCTAGCCTCAAGGATTGTGTGGCTCTTCAGACTTTCTCCGCAATAAATTCTGGTTTGGTTGGGAAAATCCCAGAATTTTTTGGTAAAGATGGTCCCTTTCCAGGTTTGGTGTTTTTGGGCTTGTGTTTTAATTTTTTTGAAGGTGGATTGCCAGCAAGTTTTTCTGGGAGTTCTATAGAGAATCTTTTGGTGAATGGTCAGAATAGTGACTCTAAACTCAATGGTTCCCTTGCTGTCTTACAGAACATGACATCCCTAAAGCAAATTTGGGCACATGGTAATTCATTTACTGGTCCTATACCAGACTTGTCAAACCATGATCAACTTTTTGATGTTAGTTTGAGGGATAACCAGTTAACTGGTGTTGTTCCACCCTCTCTCACTTCTCTTTCGGGTCTGAAGGTTGTGAACTTAACCAATAATTATCTTCAAGGATCCCCTCCCAAGTTCCCATCTGGTGTGAGGGTTGATAATGATATGGAAAGGGGGAACAATCGTTTTTGCACAAAAGTGGTTGGTCAGCCATGTAGTCCACTTGTAAATGCTTTACTTTCTGTTGTTGAGCCTTTGGGTTATCCTTTCAAACTTGCTGATGGTTGGAAGGGTAATGACCCTTGTGCTACACAATGGATAGGGATTGTTTGCTCCGCCAGTGGTAACATTTCGGTTATCGACTTTCAGAGCATGGGATTCTCTGGCAATATTTCTCCTAGTTTTGCCAGACTCACATCTTTGACAAAGTTGATTCTTGCTAACAATGCTCTCACTGGTACCATACCAAGTGAACTTACTAGCATGCCTCTTTTGAAAGAGCTAGATGTTTCTAATAATAATTTATATGGCAAGGTACCATCTTTCCGTGCGGATGTGGCTGTTAAAACTGGTGGAAATCCTGATATTGGAAAGGATAAACCTCAAGCTGATTCTGGAGGTAGAGATAAGAAACGTAGTTATGGAGCCATTGTTGGCATTGTGTTGGGGGTTGTCTGTTTACTTGGTGTAGGGGTTCTGGTATTTGTAAAGTATGGTAGAAAACATAAGCATGCTGGCAAAGTTCAAATTCCAGTGGTACATCCTCGTCGCTCTGGAGATGGAAATAATTTGAAGATAAGTGTTGTGAGTCCTGGTTTTAGTGGAGGAGTTAGTCCACTTAGTTCAACAAGTAATGTTCAAAATGTGGAAGCTGGTAATATGGTGATTTCAATTCAAGTTCTGAGAGAAGTTACAAACAATTTCAGTGAAGGAAACATATTGGGGATGGGTGGTTTTGGCACTGTGTACAAAGGAGAGTTAAATGATGGAACAAAGATTGCAGTGAAAAGGATGGAATCTGGGGTGGTGGTTGAGAAGGGACTGAGAGAGTTTGAGTCTGAAATTGCAGTACTTACTAAGGTTCGACATAGGCATTTGGTTGCACTCTTGGGCCATTGCTTGGATGGAAATGAGAAGCTTCTTGTGTATGAGTACATGCCTCAGGGTCCACTTAGTAGACATTTGTTTGAGTGGAAAGATGAAGGGTTAAAGCCACTGGAATGGAAGAGAAGGCTTTCCATTGCCTTGGATGTTGCTAGAGGTGTTGAATATCTTCATGGTTTGGCTCAACAAATTTTTATCCATAGGGATCTAAAGCCATCAAATATCTTGCTTGGGGATGATATGCGTGCTAAAGTATCAGACTTTGGATTGGTTCGGCTTGCTCCAGAAGGACAAGCCTCATTCGAGACTAGACTTGCTGGAACTTTTGGATATCTAGCACCAGAGTACGCAGTCACTGGACGAGTTACAACAAAGGTTGATGTATACAGCTACGGGGTGATACTTATGGAGATGATAACTGGAAGGAAAGCAATTGACAATAGCCAACCAGAAGAGAACATGCACCTTGTTACATGGTTCCGTAGGATGTTACTGAACAAAAACTCATTTAGAAAGGTGATTGACCCAACAATTGATGTTGATGATGAGGAAGCCTTAGCAAGTTTTAGGACTGTTGCTGAGTTGGCAGGACACTGTTGTTCAAAGGAGCCTTATCAACGTCCTGATATGGGTCATGTAGTGAATGTGGTAGCACCTCTTGTTGAGATATGGAAGCCTTCAGAACCTAATGATGATGAAGTTTATGGGATTGACTTGGATGTGTCCTTACCTCAAGCACTCAGTGAGTGGCAAGCTTTTGAAGGAAGGAACACTTTTGATTTGTCATCTGATTCATCAATGCTTTCTAGTAATGCTGGCAATACACAATCAAGCATACCAACTAAGCCTCCTGGTCTTTCAACTTCCCTTACATCTTCTGATGGACGATGA 2760 0.4178 MEKFQPGFGLCLVLVFAMMFHCAWSQDDAVVMGTLKKAINEPDGLQWSDPDVCKWNHVQCNSMKRVTAIQIAKLNIQGSLPKELVQLTELTRFECMNNALTGPFPYMPKSLQNLIIHDNNFSSIPSDFFIKMTNLQEVRIDYNPFNKWQVPSSLKDCVALQTFSAINSGLVGKIPEFFGKDGPFPGLVFLGLCFNFFEGGLPASFSGSSIENLLVNGQNSDSKLNGSLAVLQNMTSLKQIWAHGNSFTGPIPDLSNHDQLFDVSLRDNQLTGVVPPSLTSLSGLKVVNLTNNYLQGSPPKFPSGVRVDNDMERGNNRFCTKVVGQPCSPLVNALLSVVEPLGYPFKLADGWKGNDPCATQWIGIVCSASGNISVIDFQSMGFSGNISPSFARLTSLTKLILANNALTGTIPSELTSMPLLKELDVSNNNLYGKVPSFRADVAVKTGGNPDIGKDKPQADSGGRDKKRSYGAIVGIVLGVVCLLGVGVLVFVKYGRKHKHAGKVQIPVVHPRRSGDGNNLKISVVSPGFSGGVSPLSSTSNVQNVEAGNMVISIQVLREVTNNFSEGNILGMGGFGTVYKGELNDGTKIAVKRMESGVVVEKGLREFESEIAVLTKVRHRHLVALLGHCLDGNEKLLVYEYMPQGPLSRHLFEWKDEGLKPLEWKRRLSIALDVARGVEYLHGLAQQIFIHRDLKPSNILLGDDMRAKVSDFGLVRLAPEGQASFETRLAGTFGYLAPEYAVTGRVTTKVDVYSYGVILMEMITGRKAIDNSQPEENMHLVTWFRRMLLNKNSFRKVIDPTIDVDDEEALASFRTVAELAGHCCSKEPYQRPDMGHVVNVVAPLVEIWKPSEPNDDEVYGIDLDVSLPQALSEWQAFEGRNTFDLSSDSSMLSSNAGNTQSSIPTKPPGLSTSLTSSDGR 919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3194g00002 919 Gene3D Ribonuclease Inhibitor 330 455 IPR032675 -
Gabi3194g00002 919 MobiDBLite consensus disorder prediction 887 919 - -
Gabi3194g00002 919 FunFam receptor protein kinase TMK1 641 859 - -
Gabi3194g00002 919 Pfam Protein kinase domain 564 838 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3194g00002 919 SMART serkin_6 563 844 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3194g00002 919 SUPERFAMILY Protein kinase-like (PK-like) 537 839 IPR011009 -
Gabi3194g00002 919 Pfam Leucine rich repeat N-terminal domain 27 61 IPR013210 -
Gabi3194g00002 919 Pfam Leucine rich repeat N-terminal domain 333 367 IPR013210 -
Gabi3194g00002 919 FunFam Receptor-like kinase TMK4 26 324 - -
Gabi3194g00002 919 MobiDBLite consensus disorder prediction 445 465 - -
Gabi3194g00002 919 Pfam Leucine Rich repeats (2 copies) 394 430 IPR025875 -
Gabi3194g00002 919 Gene3D Phosphorylase Kinase; domain 1 532 640 - -
Gabi3194g00002 919 ProSitePatterns Protein kinases ATP-binding region signature. 569 591 IPR017441 GO:0005524
Gabi3194g00002 919 ProSitePatterns Serine/Threonine protein kinases active-site signature. 688 700 IPR008271 GO:0004672|GO:0006468
Gabi3194g00002 919 FunFam receptor protein kinase TMK1 529 640 - -
Gabi3194g00002 919 ProSiteProfiles Protein kinase domain profile. 563 844 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3194g00002 919 PANTHER OSJNBA0070M12.3 PROTEIN 12 919 - -
Gabi3194g00002 919 CDD STKc_IRAK 569 843 - -
Gabi3194g00002 919 Gene3D Transferase(Phosphotransferase) domain 1 641 855 - -
Gabi3194g00002 919 Gene3D Ribonuclease Inhibitor 25 325 IPR032675 -
Gabi3194g00002 919 FunFam Leucine-rich repeat receptor-like kinase 329 454 - -
Gabi3194g00002 919 SUPERFAMILY L domain-like 43 435 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3194g00002 Gabi-Chr3194 26494 30474 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3194g00002 66 846 Receptor kinase-like Gene Family AT5G07280 30.769 3.26e-78 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Gabi3194g00002 Pkinase 3.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3194g00002 K00924 - gmx:100776064 1387.09