Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3187g00010 ATGATTACTGTTGTTTCTGGAAATGATCAGCGTGAGGGAAGTGCTGTAGCTGTGCTAGAATGTATGGGCAGCAAAGGATTTGTGCTAGTAAATGGGGTGGTTGTCAAGAAGAATACCAGCTGCATGCTTAACTCGGGTGACGACGTGGCTTTTGGTTTGCTGGGAGTTCCTTCTTATATTTTCCAGCAAGTAAATACTGAGGTTGCAGTTAAGGGTCCAGAAGCTCAGAGTGGCGTTGGCAGATTTCCACAGCTTGAAAGGAGAGCCGGAGACCCTGCCGTGGCTGGGGCTTCTATTTTGGCTTCTCTTTCTAGCCTTAGACAGGAACTTGCAATATGGAAATCTCCATCTCAGACCGCCAGTAAACCTCACCAGGGTACCGATGTTTCTAATCATTCTGTTCTCCATGATGGTACAGAAACTGAGCTTGATGGCCTGGAAGGCAACTCAACTCCAAATGTAGGGGATGATAAAGCTGCTAACGTTGAAGCAAGCGACTCTCCTATTGATTGCGATCCAGATGATGCGGGCACAGAGGCAGGCAATGTATTGGAAGAAATAAATGGGATGAGGGATACACAAGCTGCATCAACTTCGGGTACATCTGTACGTTGCGCAGTTTTTAAAGATGATGTTCATGCTGTAATACTGGATGGAAAAGAAATAGAAGTGTCCTTTGACAGCTTCCCGTACTATTTAAGTGAGAATACAAAAAATGTCCTGATTGCAGCTTGCTTTATACACCTGAAGCATAAAGAACATGCAAAGTACACCACGGATCTTACAACCATAAACCCTCGTATTCTACTCTCGGGACCTGCAGGGTCAGAAATATATCAGGAGATGTTGGTGAAAGCACTTGCAAAACACTTTGGAGCTAAATTGCTCATATTTGATAGCCATTTGCTTTTGGGTGGTTTATCTTCCAAGGAAGCTGAGCTGCTTAAAGATGGATTTAATGCTGAGAAATCCTGCAGCTGCACCAAACAATGTCCTACAGCCACAGACATGGATCCATCAGCTAGTGAAACACAGATACCTAGCTCTTCAAATGCAGCTACTTCGTATGGCCCTGAGTCTCAACCGAAGTTGGAAACTGATGGTGTACCATCTACCTCTGGAACAGCTAAAACTACCTTGTTTAAACTAGGTGACAGGGTAAAATATAGCTGTTCGTCTTCTGTTGTCTTGCCTCACACATCTTCTTCAAGGGGTCCACCTAATGGAAGTCGGGGGAAGATTGTCTTACTTTTTGATGATAATCCCCTGTCAAAAATTGGTGTAAGATTTGACAAACCCATAACTGATGGAGTTGATCTTGGAGGTGCCTGTGAGCGAGGTGAAGGATTTTTCTGCAACGTCTCGGATCTTCGATTGGAAAACAGTGCCATTGAAGAACTGGACAAACTACTTATTAATACTTTGTTTGAGGTTGTGTTCAGTGAGAGCAGAGATGCGCCTTTCATTTTGTTCATGAAAGATGCAGAGAAGTCTATAGTAGGAAATGGAGATCCTTTTTCTTTTAAAAGTAGGCTTGAAAAGCTTCCAGACAATGTGGTGGTAATAGGTTCACACACTCACACTGACAGTCGAAAGGAGAAGTCACATCCTGGGGGTTTGCTTTTTACAAAGTTTGGCAGCAATCAGACTGCCCTTCTTGACTTGGCTTTCCCTGATAGTTTTGGAAGATTGCATGATAGGGGAAAGGAAGTCCCAAAGCCAAACAAAACTTTGACTAAGCTTTTCCCAAATAAAGTAATAATTCACATGCCACAGGATGAGGCACTTCTAGCGTCTTGGAAGCAGCAACTTGATCGAGATGTTGAGACTCTCAAAATCAAAGGAAATTTGCACCATTTGCGTACAGTTTTGAGTCGTTGTGGGATGGAATGTGAAGGAATTGAGACCTTGAGCATTAACGAGACGCTTACAAATGAAATTGCTGAGAAGATAGTTGGTTGGGCTGTAAGCCACCATCTCATGCAGAATTCTGAAGCTGATCCTGATGCAAAACTTGCGTTGTCTTGTCAGAGCATCCAGTATGGAATTGGGATCTTACAGGCTATCCAGAATGAGTCGAAGAGCCTGAAGAAGTCTCTTAAGGATGTTGTAACAGAAAATGAGTTTGAAAAGAGGCTTTTGGCTGATGTTATTCCACCTAGTGACATCGGTGTTACTTTTGATGATATTGGAGCTCTTGAAAATGTCAAGGATACATTGAAGGAATTGGTGATGCTTCCTTTACAGAGACCCGAGCTTTTTCGCAAGGGGCAATTAACCAAGCCTTGCAAGGGTATCCTATTATTTGGTCCCCCTGGAACTGGCAAGACAATGCTTGCAAAGGCAGTTGCTACTGAAGCAGGTGCAAATTTCATCAACATTTCCATGTCAAGCATCACGTCTAAGTGGTTTGGTGAGGGCGAAAAATACGTGAAAGCTGTTTTCTCTCTGGCGAGTAAAATTGCTCCTAGTGTGATATTTGTTGATGAGGTTGATAGCATGTTGGGCCGGAGGGAAAATCCTGGGGAGCATGAGGCCATGCGAAAAATGAAAAATGAATTCATGGTGAACTGGGACGGTTTACGTACAAAGGATTCTGAGCGGGTTCTTGTGCTTGCAGCCACTAATAGGCCTTTTGACCTTGATGAGGCTGTCATTCGGAGGCTGCCTCGGAGATTAATGGTAAATTTGCCAGATGCTCAAAATAGAGCGAAAATATTAAGAGTTATACTTGCAAAAGAAGACTTGTCTGCTGATGTTCATTTGCATGCAATTGCAAGTATGACTGATGGATATTCTGGAAGTGATCTTAAGAATCTGTGTGTAACTGCTGCGCACCGTCCAATTAAAGAAATATTGGAAAAGGAAAAAAAGGAACATGCTGCTGCTCTATCAGAAGGTAGACCTGCTCCAGCATTAAGTGGAAGTGCAGATATCCGATCTTTAAACATGGAAGACTTTAAATATGCCCATCAACAGGTGTGTGCAAGTGTTTCCTCTGAATCCGTAAATATGACTGAACTTTTACAATGGAATGAACTATATGGTGAAGGTGGTTCAAGAGTAAGGAGAGCACTCAGCTATTTCATGTGA 3093 0.4297 MITVVSGNDQREGSAVAVLECMGSKGFVLVNGVVVKKNTSCMLNSGDDVAFGLLGVPSYIFQQVNTEVAVKGPEAQSGVGRFPQLERRAGDPAVAGASILASLSSLRQELAIWKSPSQTASKPHQGTDVSNHSVLHDGTETELDGLEGNSTPNVGDDKAANVEASDSPIDCDPDDAGTEAGNVLEEINGMRDTQAASTSGTSVRCAVFKDDVHAVILDGKEIEVSFDSFPYYLSENTKNVLIAACFIHLKHKEHAKYTTDLTTINPRILLSGPAGSEIYQEMLVKALAKHFGAKLLIFDSHLLLGGLSSKEAELLKDGFNAEKSCSCTKQCPTATDMDPSASETQIPSSSNAATSYGPESQPKLETDGVPSTSGTAKTTLFKLGDRVKYSCSSSVVLPHTSSSRGPPNGSRGKIVLLFDDNPLSKIGVRFDKPITDGVDLGGACERGEGFFCNVSDLRLENSAIEELDKLLINTLFEVVFSESRDAPFILFMKDAEKSIVGNGDPFSFKSRLEKLPDNVVVIGSHTHTDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEVPKPNKTLTKLFPNKVIIHMPQDEALLASWKQQLDRDVETLKIKGNLHHLRTVLSRCGMECEGIETLSINETLTNEIAEKIVGWAVSHHLMQNSEADPDAKLALSCQSIQYGIGILQAIQNESKSLKKSLKDVVTENEFEKRLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFRKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDSERVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDAQNRAKILRVILAKEDLSADVHLHAIASMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKEHAAALSEGRPAPALSGSADIRSLNMEDFKYAHQQVCASVSSESVNMTELLQWNELYGEGGSRVRRALSYFM 1030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3187g00010 1030 MobiDBLite consensus disorder prediction 115 174 - -
Gabi3187g00010 1030 CDD RecA-like_ATAD1 729 895 - -
Gabi3187g00010 1030 ProSitePatterns AAA-protein family signature. 869 888 IPR003960 GO:0005524|GO:0016887
Gabi3187g00010 1030 Pfam AAA+ lid domain 919 957 IPR041569 -
Gabi3187g00010 1030 MobiDBLite consensus disorder prediction 332 375 - -
Gabi3187g00010 1030 Pfam ATPase family associated with various cellular activities (AAA) 766 895 IPR003959 GO:0005524|GO:0016887
Gabi3187g00010 1030 Coils Coil 686 706 - -
Gabi3187g00010 1030 Gene3D - 898 992 - -
Gabi3187g00010 1030 MobiDBLite consensus disorder prediction 115 134 - -
Gabi3187g00010 1030 Gene3D - 724 1005 IPR027417 -
Gabi3187g00010 1030 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 724 901 - -
Gabi3187g00010 1030 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 208 1029 - -
Gabi3187g00010 1030 SMART AAA_5 762 899 IPR003593 GO:0016887
Gabi3187g00010 1030 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 725 1003 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3187g00010 Gabi-Chr3187 131110 145255 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3187g00010 725 977 Calmodulin-binding Proteins AT3G56690 40.000 3.78e-43 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3187g00010 - - gmx:100780098 1690.63