Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3187g00009 ATGGTTTCAACGAGACGCAACGGTGGATCTCTCTCTTCCAACAACACCAAAAGACCTTGCTCTTCCGAAGACAAGCCTTCATCATCTCCTTCACCTAAGCGCCACAAGGCCGACAATGTTGCCGCCGCCGCCGCCGCCGAGGAGTCGGACAAACCGATGCCGCCTGCAGAGAATTCCAAGGAATTGTGCACTCCGGAGCCCCCCGCTGATCCCGGAGAATGCGGTCCCGCTGATGCTCAGATCTCCGGAGCAGGCGGTGCCGACGCCAAGGCCGATGCTACGCCGCCGATCGCTGATGGGTCTTCGCCGGCTCTGGTGGCTGATAAGCCTAGAGCACCGTTTACTTCTTGGAGTATATATCAGAAACAAAACCCAAATCCGGAGGCGCCAGTTCCATGGTGCAGGCTTCTGTCCCAGTCAGCACTGAATCCAAATGTTGCCATTTGCACGCCCAACTTTACTATCGGCTCTGGTAGAAATTGCAACTTTCAATTGAAGGACCATACTATAAGTGCAAATTTATGCAAGATCAAGCTTACACAGCGTGAGGGAAGTGCTGTAGCTGTGCTAGAATGTATGGGCAGCAAAGGATTTGTGCTAGTAAATGGGGTGGTTGTCAAGAAGAATACCAGCTGCATGCTTAACTCGGGTGACGACGTGGCTTTTGGTTTGCTGGGAGTTCCTTCTTATATTTTCCAGCAAGTAAATACTGAGGTTGCAGTTAAGGGTCCAGAAGCTCAGAGTGGCGTTGGCAGATTTCCACAGCTTGAAAGGAGAGCCGGAGACCCTGCCGTGGCTGGGGCTTCTATTTTGGCTTCTCTTTCTAGCCTTAGACAGGAACTTGCAATATGGAAATCTCCATCTCAGACCGCCAGTAAACCTCACCAGGGTACCGATGTTTCTAATCATTCTGTTCTCCATGATGGTACAGAAACTGAGCTTGATGGCCTGGAAGGCAACTCAACTCCAAATGTAGGGGATGATAAAGCTGCTAACGTTGAAGCAAGCGACTCTCCTATTGATTGCGATCCAGATGATGCGGGCACAGAGGCAGGCAATGTATTGGAAGAAATAAATGGGATGAGGGATACACAAGCTGCATCAACTTCGGGTACATCTGTACGTTGCGCAGTTTTTAAAGATGATGTTCATGCTGTAATACTGGATGGAAAAGAAATAGAAGTGTCCTTTGACAGCTTCCCGTACTATTTAAGTGAGAATACAAAAAATGTCCTGATTGCAGCTTGCTTTATACACCTGAAGCATAAAGAACATGCAAAGTACACCACGGATCTTACAACCATAAACCCTCGTATTCTACTCTCGGGACCTGCAGGGTCAGAAATATATCAGGAGATGTTGGTGAAAGCACTTGCAAAACACTTTGGAGCTAAATTGCTCATATTTGATAGCCATTTGCTTTTGGGTGGTTTATCTTCCAAGGAAGCTGAGCTGCTTAAAGATGGATTTAATGCTGAGAAATCCTGCAGCTGCACCAAACAATGTCCTACAGCCACAGACATGGATCCATCAGCTAGTGAAACACAGATACCTAGCTCTTCAAATGCAGCTACTTCGTATGGCCCTGAGTCTCAACCGAAGTTGGAAACTGATGGTGTACCATCTACCTCTGGAACAGCTAAAACTACCTTGTTTAAACTAGGTGACAGGGTAAAATATAGCTGTTCGTCTTCTGTTGTCTTGCCTCACACATCTTCTTCAAGGGGTCCACCTAATGGAAGTCGGGGGAAGATTGTCTTACTTTTTGATGATAATCCCCTGTCAAAAATTGGTGTAAGATTTGACAAACCCATAACTGATGGAGTTGATCTTGGAGGTGCCTGTGAGCGAGGTGAAGGATTTTTCTGCAACGTCTCGGATCTTCGATTGGAAAACAGTGCCATTGAAGAACTGGACAAACTACTTATTAATACTTTGTTTGAGGTTGTGTTCAGTGAGAGCAGAGATGCGCCTTTCATTTTGTTCATGAAAGATGCAGAGAAGTCTATAGTAGGAAATGGAGATCCTTTTTCTTTTAAAAGTAGGCTTGAAAAGCTTCCAGACAATGTGGTGGTAATAGGTTCACACACTCACACTGACAGTCGAAAGGAGAAGTCACATCCTGGGGGTTTGCTTTTTACAAAGTTTGGCAGCAATCAGACTGCCCTTCTTGACTTGGCTTTCCCTGATAGTTTTGGAAGATTGCATGATAGGGGAAAGGAAGTCCCAAAGCCAAACAAAACTTTGACTAAGCTTTTCCCAAATAAAGTAATAATTCACATGCCACAGGATGAGGCACTTCTAGCGTCTTGGAAGCAGCAACTTGATCGAGATGTTGAGACTCTCAAAATCAAAGGAAATTTGCACCATTTGCGTACAGTTTTGAGTCGTTGTGGGATGGAATGTGAAGGAATTGAGACCTTGAGCATTAACGAGACGCTTACAAATGAAATTGCTGAGAAGATAGTTGGTTGGGCTGTAAGCCACCATCTCATGCAGAATTCTGAAGCTGATCCTGATGCAAAACTTGCGTTGTCTTGTCAGAGCATCCAGTATGGAATTGGGATCTTACAGGCTATCCAGAATGAGTCGAAGAGCCTGAAGAAGTCTCTTAAGGATGTTGTAACAGAAAATGAGTTTGAAAAGAGGCTTTTGGCTGATGTTATTCCACCTAGTGACATCGGTGTTACTTTTGATGATATTGGAGCTCTTGAAAATGTCAAGGATACATTGAAGGAATTGGTGATGCTTCCTTTACAGAGACCCGAGCTTTTTCGCAAGGGGCAATTAACCAAGCCTTGCAAGGGTATCCTATTATTTGGTCCCCCTGGAACTGGCAAGACAATGCTTGCAAAGGCAGTTGCTACTGAAGCAGGTGCAAATTTCATCAACATTTCCATGTCAAGCATCACGTCTAAGTGGTTTGGTGAGGGCGAAAAATACGTGAAAGCTGTTTTCTCTCTGGCGAGTAAAATTGCTCCTAGTGTGATATTTGTTGATGAGGTTGATAGCATGTTGGGCCGGAGGGAAAATCCTGGGGAGCATGAGGCCATGCGAAAAATGAAAAATGAATTCATGGTGAACTGGGACGGTTTACGTACAAAGGATTCTGAGCGGGTTCTTGTGCTTGCAGCCACTAATAGGCCTTTTGACCTTGATGAGGCTGTCATTCGGAGGCTGCCTCGGAGATTAATGGTAAATTTGCCAGATGCTCAAAATAGAGCGAAAATATTAAGAGTTATACTTGCAAAAGAAGACTTGTCTGCTGATGTTCATTTGCATGCAATTGCAAGTATGACTGATGGATATTCTGGAAGTGATCTTAAGAATCTGTGTGTAACTGCTGCGCACCGTCCAATTAAAGAAATATTGGAAAAGGAAAAAAAGGAACATGCTGCTGCTCTATCAGAAGGTAGACCTGCTCCAGCATTAAGTGGAAGTGCAGATATCCGATCTTTAAACATGGAAGACTTTAAATATGCCCATCAACAGGTGTGTGCAAGTGTTTCCTCTGAATCCGTAAATATGACTGAACTTTTACAATGGAATGAACTATATGGTGAAGGTGGTTCAAGAGTAAGGAGAGCACTCAGCTATTTCATGTGA 3606 0.447 MVSTRRNGGSLSSNNTKRPCSSEDKPSSSPSPKRHKADNVAAAAAAEESDKPMPPAENSKELCTPEPPADPGECGPADAQISGAGGADAKADATPPIADGSSPALVADKPRAPFTSWSIYQKQNPNPEAPVPWCRLLSQSALNPNVAICTPNFTIGSGRNCNFQLKDHTISANLCKIKLTQREGSAVAVLECMGSKGFVLVNGVVVKKNTSCMLNSGDDVAFGLLGVPSYIFQQVNTEVAVKGPEAQSGVGRFPQLERRAGDPAVAGASILASLSSLRQELAIWKSPSQTASKPHQGTDVSNHSVLHDGTETELDGLEGNSTPNVGDDKAANVEASDSPIDCDPDDAGTEAGNVLEEINGMRDTQAASTSGTSVRCAVFKDDVHAVILDGKEIEVSFDSFPYYLSENTKNVLIAACFIHLKHKEHAKYTTDLTTINPRILLSGPAGSEIYQEMLVKALAKHFGAKLLIFDSHLLLGGLSSKEAELLKDGFNAEKSCSCTKQCPTATDMDPSASETQIPSSSNAATSYGPESQPKLETDGVPSTSGTAKTTLFKLGDRVKYSCSSSVVLPHTSSSRGPPNGSRGKIVLLFDDNPLSKIGVRFDKPITDGVDLGGACERGEGFFCNVSDLRLENSAIEELDKLLINTLFEVVFSESRDAPFILFMKDAEKSIVGNGDPFSFKSRLEKLPDNVVVIGSHTHTDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEVPKPNKTLTKLFPNKVIIHMPQDEALLASWKQQLDRDVETLKIKGNLHHLRTVLSRCGMECEGIETLSINETLTNEIAEKIVGWAVSHHLMQNSEADPDAKLALSCQSIQYGIGILQAIQNESKSLKKSLKDVVTENEFEKRLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFRKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDSERVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDAQNRAKILRVILAKEDLSADVHLHAIASMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKEHAAALSEGRPAPALSGSADIRSLNMEDFKYAHQQVCASVSSESVNMTELLQWNELYGEGGSRVRRALSYFM 1201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3187g00009 1201 ProSitePatterns AAA-protein family signature. 1040 1059 IPR003960 GO:0005524|GO:0016887
Gabi3187g00009 1201 MobiDBLite consensus disorder prediction 503 546 - -
Gabi3187g00009 1201 Coils Coil 857 877 - -
Gabi3187g00009 1201 Pfam AAA+ lid domain 1090 1128 IPR041569 -
Gabi3187g00009 1201 Gene3D - 895 1176 IPR027417 -
Gabi3187g00009 1201 MobiDBLite consensus disorder prediction 1 27 - -
Gabi3187g00009 1201 MobiDBLite consensus disorder prediction 286 305 - -
Gabi3187g00009 1201 MobiDBLite consensus disorder prediction 1 108 - -
Gabi3187g00009 1201 SMART AAA_5 933 1070 IPR003593 GO:0016887
Gabi3187g00009 1201 Gene3D - 132 240 - -
Gabi3187g00009 1201 MobiDBLite consensus disorder prediction 286 306 - -
Gabi3187g00009 1201 Pfam ATPase family associated with various cellular activities (AAA) 937 1066 IPR003959 GO:0005524|GO:0016887
Gabi3187g00009 1201 CDD RecA-like_ATAD1 900 1066 - -
Gabi3187g00009 1201 Gene3D - 1069 1163 - -
Gabi3187g00009 1201 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 895 1072 - -
Gabi3187g00009 1201 CDD FHA 135 223 - -
Gabi3187g00009 1201 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 896 1174 IPR027417 -
Gabi3187g00009 1201 Pfam FHA domain 154 223 IPR000253 GO:0005515
Gabi3187g00009 1201 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 379 1200 - -
Gabi3187g00009 1201 SUPERFAMILY SMAD/FHA domain 130 225 IPR008984 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3187g00009 Gabi-Chr3187 131109 145932 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3187g00009 896 1148 Calmodulin-binding Proteins AT3G56690 40.000 5.40e-43 169