Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3187g00006 ATGGCTGCTTTTACTTCTCTCTCCTTCTCTCCTTGCATCCTCTATCTCCGTCCAAAACCAACCACGCTTTCCGTTTCCGTTTCACTTTCTGCGCTCCATGGCAGTGATGGATCTAACTCTAGAGTACCTCGCAAAAGAACAAGAGGAATAGAAGGTCCTCGAAAAAGCATGGAAGACTCTGTTCAACGCAAGATGGAGCAATTTTACGAAGGATCTGATGGTCCACCACTTCGTATTCTCCCTATTGGTGGCCTCGGTGAAATTGGGATGAATTGCATGCTTGTTGGTAACCATGACCGTTATATCCTCATTGATGCTGGTGTCATGTTTCCAGACTATGATGAACTTGGAGTTCAGAAGATTATGCCTGATACAACATTTATAAGAAAATGGAGCCACAAAATTGAAGCGCTTGTTATAACACATGGTCATGAAGATCATATTGGTGCCTTGCCTTGGGTCATCCCAGCATTGGATTCCAATACACCAATTTTTGCTTCTTCCTTTACAATGGAGATGATGAGTGATTCAACAAATGTATTGTCGCCTGGAAGGACAACCAGTGAATCTGTTGTGGCAGATGCATTATTGAGGCATATTTCAGCTTCTAAAGGAAGGGTTATTACAACCCAATTCGCATCAAATCTACATCGGCTTGGAAGTGTGAAAGCTGCTGCTAATTTAACTGGCAGAAAGTTGGTATTTGTTGGCATGTCTTTAAGGACGTATTTAGATGCAGCTTGGAAGGATGGAAAGGCTCCATTTGATCCATCCACTCTGGTGAAAGCAGAGGATATTGATGCTTATGCTCCAAAGGATTTGCTAATTGTAACAACAGGCTCTCAAGCAGAACCACGTGCTGCTTTGAATCTTGCATCTTATGGAAGTAGTCATGCTTTCAAACTAACTAAGGAAGATGTTGTTTTGTATTCAGCAAAGGTTATCCCTGGTAATGAGTCTCGTGTGATGAAAATGCTAAACCGCATATCAGAGATAGGATCAACAATAGTTATGGGGAAAAATGAAGGTCTGCACACATCTGGTCATGCATACCGTGGAGAATTGGAGGAAGTACTTAGAATAGTGAAGCCACAACATTTTCTTCCCATACATGGAGAACTCTTGTTCCTGAAGGAACATGAATTACTTGGAAAATCAACTGGCATTCGGCACACTGCTGTTATTAAGAATGGAGAGATGCTTGGTGTTTCACATTTGAGAAATAGAAAAGTCCTTTCTAACGGTTTCATTTCCCTTGGAAAAGAGAATTTACAGTTGAAATATAGTGATGGCGACAGAGCATTTGGTACATCAAGCGAACTCTTCATTGATGAAAGATTGAGAATTGCATTAGATGGCATCATTGTGGTTAGCATGGAAATATTTCGCCCTAAAAATTTAGAGAGTTTGGCTGAAAACACCTTAAAAGGGAAGATAAGAATTACCACAAGATGCCTATGGCTTGACACAGGGAAATTAATGGATGCACTCTATAAAGCTGCTCATGCAGCTCTTTCAAGCTGCCCTGTAAACTGTCCACTGGCTCACATGGAAAGAACTGTGTCTGAGGTGTTGAGGAAGGTGGTGAGGAAGTACTGTGGTAAACGGCCTGAAGTTATTGCCATTGCCATAGAAAATCCTGCAGCCGTTCTTGCTGATGAGATAAACACAAAATTGTCTGGCAAATCCCATGTGGGTCCTGGAATATCAACATTAAGAAAAGCGCTGGATGGACATGGGAAGGAAAATCAGACAGTCACGCTGCAAATAAGAGATGATGATGGCATTGCTATTGACGGACAACTACCTGAGGAAGACACAACTACTTCAAGTGGAGTTCAGGGTGATTTATTTGATTCAGAGGATTCAGATGAATTTTGGAAACCATTCAGTGCACCATTACCAGTTGAGAAGTCAATCAAAGCTAACAATGGTTATGTTTCACACAAGGAGCATAAGCGCAATCTGAAGAAAGATGATTATGAAGACATTGACGAAGCCAAGTCAGAAGAAACGTCTAATTCTGAACCCAAGTCTTCAATATCAATGAAGAGAAATAAATGGAAAACTGAGGAAATTAAGAAGCTGATTGGCATGCGCATGGAACTACGTGACAGATTTCAAATTGTGAAGGGACGGATGGCCCTCTGGGAAGAGATATCTCAAAACTTGATGGCTGATGGGATCAGCAAAAGTCCTGGACAGTGCAAATCTTTGTGGACATCTTTGGTACTAAAATATAAGGAGATCAAGAATGAGAAGGATAGCGAGAAAAGTTGGCAATATCTTGAGGACATGGAAAGAGTAATATCTGATAGCGAAGCACCGGCAACAAAATGA 2340 0.4128 MAAFTSLSFSPCILYLRPKPTTLSVSVSLSALHGSDGSNSRVPRKRTRGIEGPRKSMEDSVQRKMEQFYEGSDGPPLRILPIGGLGEIGMNCMLVGNHDRYILIDAGVMFPDYDELGVQKIMPDTTFIRKWSHKIEALVITHGHEDHIGALPWVIPALDSNTPIFASSFTMEMMSDSTNVLSPGRTTSESVVADALLRHISASKGRVITTQFASNLHRLGSVKAAANLTGRKLVFVGMSLRTYLDAAWKDGKAPFDPSTLVKAEDIDAYAPKDLLIVTTGSQAEPRAALNLASYGSSHAFKLTKEDVVLYSAKVIPGNESRVMKMLNRISEIGSTIVMGKNEGLHTSGHAYRGELEEVLRIVKPQHFLPIHGELLFLKEHELLGKSTGIRHTAVIKNGEMLGVSHLRNRKVLSNGFISLGKENLQLKYSDGDRAFGTSSELFIDERLRIALDGIIVVSMEIFRPKNLESLAENTLKGKIRITTRCLWLDTGKLMDALYKAAHAALSSCPVNCPLAHMERTVSEVLRKVVRKYCGKRPEVIAIAIENPAAVLADEINTKLSGKSHVGPGISTLRKALDGHGKENQTVTLQIRDDDGIAIDGQLPEEDTTTSSGVQGDLFDSEDSDEFWKPFSAPLPVEKSIKANNGYVSHKEHKRNLKKDDYEDIDEAKSEETSNSEPKSSISMKRNKWKTEEIKKLIGMRMELRDRFQIVKGRMALWEEISQNLMADGISKSPGQCKSLWTSLVLKYKEIKNEKDSEKSWQYLEDMERVISDSEAPATK 779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3187g00006 779 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 344 381 IPR011108 -
Gabi3187g00006 779 SMART Lactamase_B_5a 89 281 IPR001279 -
Gabi3187g00006 779 Gene3D - 688 749 - -
Gabi3187g00006 779 Gene3D - 188 338 IPR042173 -
Gabi3187g00006 779 MobiDBLite consensus disorder prediction 644 673 - -
Gabi3187g00006 779 Pfam Metallo-beta-lactamase superfamily 90 158 IPR001279 -
Gabi3187g00006 779 CDD RNaseJ_MBL-fold 80 401 - -
Gabi3187g00006 779 MobiDBLite consensus disorder prediction 592 619 - -
Gabi3187g00006 779 MobiDBLite consensus disorder prediction 603 617 - -
Gabi3187g00006 779 Gene3D - 62 179 IPR036866 -
Gabi3187g00006 779 MobiDBLite consensus disorder prediction 643 684 - -
Gabi3187g00006 779 CDD GT1 686 751 - -
Gabi3187g00006 779 SUPERFAMILY Metallo-hydrolase/oxidoreductase 77 401 IPR036866 -
Gabi3187g00006 779 Pfam Myb/SANT-like DNA-binding domain 685 768 IPR044822 -
Gabi3187g00006 779 ProSiteProfiles Myb-like domain profile. 680 744 IPR001005 -
Gabi3187g00006 779 MobiDBLite consensus disorder prediction 39 57 - -
Gabi3187g00006 779 MobiDBLite consensus disorder prediction 33 57 - -
Gabi3187g00006 779 PANTHER RIBONUCLEASE J 173 779 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3187g00006 Gabi-Chr3187 93263 108461 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3187g00006 687 771 Trihelix Transcription Factor Family AT2G38250 33.333 3.66e-08 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Gabi3187g00006 Myb_DNA-bind_4 3.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3187g00006 - - gmx:100783850 1024.23