Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3187g00005 ATGGCTGCTTTTACTTCTCTCTCCTTCTCTCCTTGCATCCTCTATCTCCGTCCAAAACCAACCACGCTTTCCGTTTCCGTTTCACTTTCTGCGCTCCATGGCAGTGATGGATCTAACTCTAGAGTACCTCGCAAAAGAACAAGAGGAATAGAAGGTCCTCGAAAAAGCATGGAAGACTCTGTTCAACGCAAGATGGAGCAATTTTACGAAGGATCTGATGGTCCACCACTTCGTATTCTCCCTATTGGTGGCCTCGGTGAAATTGGGATGAATTGCATGCTTGTTGGTAACCATGACCGTTATATCCTCATTGATGCTGGTGTCATGTTTCCAGACTATGATGAACTTGGAGTTCAGAAGATTATGCCTGATACAACATTTATAAGAAAATGGAGCCACAAAATTGAAGCGCTTGTTATAACACATGGTCATGAAGATCATATTGGTGCCTTGCCTTGGGTCATCCCAGCATTGGATTCCAATACACCAATTTTTGCTTCTTCCTTTACAATGGAGCTTATAAGAAAACGTCTGAAGGAGCATGGTATTTTTGTTCCGTCTAGACTTAAAGTATTTAGAACAAAGAAGAAGTTTGTGGCCGGGCCTTTTGAGATAGAACCTATCAGGGTGACCCATTCTATTCCTGATTGTTGTGGACTAGTTCTTCGCTGTTCTGATGGTACTATTCTTCACACTGGGGACTGGAAGATTGATGAGACACCACTAGATGGGAAAGTCTTTGATCGTGATGCTTTAGAGGAACTCTCTAAAGAAGGAGTAACATTGATGATGAGTGATTCAACAAATGTATTGTCGCCTGGAAGGACAACCAGTGAATCTGTTGTGGCAGATGCATTATTGAGGCATATTTCAGCTTCTAAAGGAAGGGTTATTACAACCCAATTCGCATCAAATCTACATCGGCTTGGAAGTGTGAAAGCTGCTGCTAATTTAACTGGCAGAAAGTTGGTATTTGTTGGCATGTCTTTAAGGACGTATTTAGATGCAGCTTGGAAGGATGGAAAGGCTCCATTTGATCCATCCACTCTGGTGAAAGCAGAGGATATTGATGCTTATGCTCCAAAGGATTTGCTAATTGTAACAACAGGCTCTCAAGCAGAACCACGTGCTGCTTTGAATCTTGCATCTTATGGAAGTAGTCATGCTTTCAAACTAACTAAGGAAGATGTTGTTTTGTATTCAGCAAAGGTTATCCCTGGTAATGAGTCTCGTGTGATGAAAATGCTAAACCGCATATCAGAGATAGGATCAACAATAGTTATGGGGAAAAATGAAGGTCTGCACACATCTGGTCATGCATACCGTGGAGAATTGGAGGAAGTACTTAGAATAGTGAAGCCACAACATTTTCTTCCCATACATGGAGAACTCTTGTTCCTGAAGGAACATGAATTACTTGGAAAATCAACTGGCATTCGGCACACTGCTGTTATTAAGAATGGAGAGATGCTTGGTGTTTCACATTTGAGAAATAGAAAAGTCCTTTCTAACGGTTTCATTTCCCTTGGAAAAGAGAATTTACAGTTGAAATATAGTGATGGCGACAGAGCATTTGGTACATCAAGCGAACTCTTCATTGATGAAAGATTGAGAATTGCATTAGATGGCATCATTGTGGTTAGCATGGAAATATTTCGCCCTAAAAATTTAGAGAGTTTGGCTGAAAACACCTTAAAAGGGAAGATAAGAATTACCACAAGATGCCTATGGCTTGACACAGGGAAATTAATGGATGCACTCTATAAAGCTGCTCATGCAGCTCTTTCAAGCTGCCCTGTAAACTGTCCACTGGCTCACATGGAAAGAACTGTGTCTGAGGTGTTGAGGAAGGTGGTGAGGAAGTACTGTGGTAAACGGCCTGAAGTTATTGCCATTGCCATAGAAAATCCTGCAGCCGTTCTTGCTGATGAGATAAACACAAAATTGTCTGGCAAATCCCATGTGGGTCCTGGAATATCAACATTAAGAAAAGCGCTGGATGGACATGGGAAGGAAAATCAGACAGTCACGCTGCAAATAAGAGATGATGATGGCATTGCTATTGACGGACAACTACCTGAGGAAGACACAACTACTTCAAGTGGAGTTCAGGGTGATTTATTTGATTCAGAGGATTCAGATGAATTTTGGAAACCATTCAGTGCACCATTACCAGTTGAGAAGTCAATCAAAGCTAACAATGGTTATGTTTCACACAAGGAGCATAAGCGCAATCTGAAGAAAGATGATTATGAAGACATTGACGAAGCCAAGTCAGAAGAAACGTCTAATTCTGAACCCAAGTCTTCAATATCAATGAAGAGAAATAAATGGAAAACTGAGGAAATTAAGAAGCTGATTGGCATGCGCATGGAACTACGTGACAGATTTCAAATTGTGAAGGGACGGATGGCCCTCTGGGAAGAGATATCTCAAAACTTGATGGCTGATGGGATCAGCAAAAGTCCTGGACAGTGCAAATCTTTGTGGACATCTTTGGTACTAAAATATAAGGAGATCAAGAATGAGAAGGATAGCGAGAAAAGTTGGCAATATCTTGAGGACATGGAAAGAGTAATATCTGATAGCGAAGCACCGGCAACAAAATGA 2610 0.4126 MAAFTSLSFSPCILYLRPKPTTLSVSVSLSALHGSDGSNSRVPRKRTRGIEGPRKSMEDSVQRKMEQFYEGSDGPPLRILPIGGLGEIGMNCMLVGNHDRYILIDAGVMFPDYDELGVQKIMPDTTFIRKWSHKIEALVITHGHEDHIGALPWVIPALDSNTPIFASSFTMELIRKRLKEHGIFVPSRLKVFRTKKKFVAGPFEIEPIRVTHSIPDCCGLVLRCSDGTILHTGDWKIDETPLDGKVFDRDALEELSKEGVTLMMSDSTNVLSPGRTTSESVVADALLRHISASKGRVITTQFASNLHRLGSVKAAANLTGRKLVFVGMSLRTYLDAAWKDGKAPFDPSTLVKAEDIDAYAPKDLLIVTTGSQAEPRAALNLASYGSSHAFKLTKEDVVLYSAKVIPGNESRVMKMLNRISEIGSTIVMGKNEGLHTSGHAYRGELEEVLRIVKPQHFLPIHGELLFLKEHELLGKSTGIRHTAVIKNGEMLGVSHLRNRKVLSNGFISLGKENLQLKYSDGDRAFGTSSELFIDERLRIALDGIIVVSMEIFRPKNLESLAENTLKGKIRITTRCLWLDTGKLMDALYKAAHAALSSCPVNCPLAHMERTVSEVLRKVVRKYCGKRPEVIAIAIENPAAVLADEINTKLSGKSHVGPGISTLRKALDGHGKENQTVTLQIRDDDGIAIDGQLPEEDTTTSSGVQGDLFDSEDSDEFWKPFSAPLPVEKSIKANNGYVSHKEHKRNLKKDDYEDIDEAKSEETSNSEPKSSISMKRNKWKTEEIKKLIGMRMELRDRFQIVKGRMALWEEISQNLMADGISKSPGQCKSLWTSLVLKYKEIKNEKDSEKSWQYLEDMERVISDSEAPATK 869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3187g00005 869 MobiDBLite consensus disorder prediction 693 707 - -
Gabi3187g00005 869 ProSiteProfiles Myb-like domain profile. 770 834 IPR001005 -
Gabi3187g00005 869 MobiDBLite consensus disorder prediction 733 774 - -
Gabi3187g00005 869 CDD GT1 776 841 - -
Gabi3187g00005 869 MobiDBLite consensus disorder prediction 734 763 - -
Gabi3187g00005 869 SMART Lactamase_B_5a 89 286 IPR001279 -
Gabi3187g00005 869 MobiDBLite consensus disorder prediction 681 709 - -
Gabi3187g00005 869 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 434 471 IPR011108 -
Gabi3187g00005 869 Gene3D - 81 493 IPR036866 -
Gabi3187g00005 869 Gene3D - 278 428 IPR042173 -
Gabi3187g00005 869 Pfam Beta-lactamase superfamily domain 100 236 IPR001279 -
Gabi3187g00005 869 MobiDBLite consensus disorder prediction 39 57 - -
Gabi3187g00005 869 MobiDBLite consensus disorder prediction 33 57 - -
Gabi3187g00005 869 Gene3D - 778 839 - -
Gabi3187g00005 869 PANTHER RIBONUCLEASE J 1 869 - -
Gabi3187g00005 869 CDD RNaseJ_MBL-fold 80 491 - -
Gabi3187g00005 869 SUPERFAMILY Metallo-hydrolase/oxidoreductase 77 491 IPR036866 -
Gabi3187g00005 869 Pfam Myb/SANT-like DNA-binding domain 775 858 IPR044822 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3187g00005 Gabi-Chr3187 93263 108461 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3187g00005 777 861 Trihelix Transcription Factor Family AT2G38250 33.333 4.55e-08 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Gabi3187g00005 Lactamase_B_2 5e-10 CL0381
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3187g00005 - - gmx:100783850 1493.4