Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3187g00002 ATGGGGTTCCATGACTTGGTTTTGCTATTATGTTCTACTTGGTGTGTCTTTTATGTGGGTAGTTGCAGTGCTCAATTGCAACCCTCTCAGACCCAAGTTCTTCTCCAGTTGAAAAAGCAATTGGAGTACCCAAAACAGTTGGAAATATGGAAAGATCGTTGGACAGAACTTTGCTCTATACCTTCTTCTACACAAGTAAACCTCACATGCAAGGACAATTTTGTTACTGAACTCACCATCTTGGGTGATAAACCAACTAAGGATAGAGATTTTGATGGGTTTGCTATTCCAAATCAAACACTATCACAAAGCTTCTCCATGGACTCTTTTGTGGCTACTTTAGCAAGGTTAACTAGCCTGAGAGTTCTTCGTCTCATCTCTTTGGGTATTTGGGGACCACTCCCTAATAGTATTCACCGGCTTTTTGCACTTGAACACTTGGACTTGAATTCTAACTATCTGTATGGATCAATCCCTCCAAAGATTTCCACAATGGTGAACCTTCAAACTCTTAGATTGGGTGATAATTTCTTCAATGGTACCATACCCAGCTTGTTCAATTCATCAAGTAATCTTATTGTTCTTAGTTTGAAGAATAACAGGTTGAAGGGTCCATTTCCACCTTCAATCCTTAGCATCACTACCCTCACTGACATTGACATGTCAAGCAATCAAATATCAGGAAGCTTGCAAGATTTCACTGGTTTGAGTAGCTTGGAACAGCTAGATTTAAGGGAAAACAGATTAGACTCTGAACTACCTGCAATGCCTAAAGGGTTGATCAGGCTTTTCCTCAGTATAAACTCCTTCTCAGGTCAAATTCCAAAGCAATATGGTCAACTAAATAAGCTTCAACAGCTTGATATTTCCTTCAATGCACTCACAGGCACTGCTCCTGCTGAACTTTTTTCTTTGCCTAACATCAGTTACTTGAATTTGGCATCAAATATGTTTGGTGGGACACTCCAAGATCACCTAATATGTAGCAGCCAACTTAGATTTGTTGACATATCACACAATAGGTTAGTGGGGGGCTTGCCTTCTTCTCTTAGCACTGAATCAGAAAATAGAGTTGTTAAGAGCGATGGAAACTGTTTATCTGGGAGTGTGCAACATCAGCATTCAGTGTCCTACTGCACAGAGGCTCATGTGAAGAAGAAACCTCAAAGAGTTGGAGTTTTTGTTGGTGTCATTGTGGGAATTCTTGTGATCATCGTGGTTTTGGCTTTGTGCATTGTTATAACTTGTAAAAGGTATTGCTCTCGAGGGATGTCAGAGCAGCACCTATTGCATAAAACAGTCCAAGATAGCTACTCAGCAGGGTTCTCCTCTGAGCTTATTACAAATGCAAGATATGTTTCTGAAGCTGCTAAGTTAGGCAAGGAAGACCTTCCCATGTGTCGCTCATATTCCTTGGAAGAGCTAAAGGAAGCCACAAATAACTTTGACAACTCTACTTTTATGGGTGAAAATATATATGGCAAGCTTTATAGAGGAAAACTGGACAGTGGGATACAGGTTGTAATAAGGTGCTTACCTTTGTCAAAAAAGTATTCAATTCGGAATTTCAAACTGAGGTTGAATTTGCTTGCAAAGCTCCGTCACCCCAATTTGGTATCCCTCTTGGGGCACTGCATTGATGGTGTTTTAGGAGAGAATACTACCACAAAAGTCTTTCTCATTTATGAATGTGTGTCAAATGGAAGTTTTCAGACTTATCTCTCTGGAGATAGTCCTGGCAAGGTTTTTAATTGGTCAGAGCGATTATCAGTTCTAATTAGTATTGCTAAGGCTGTCCACTTTCTACACACTGGAACAATACCTGGTTTCTTCAAAAATCGAATTAAGACCAACAATATCTTGCTTACTGAGAATTGGATAGCAAAGTTGAGTGACTATGGATTGTCCATTATCTCAGAAGAAACTGATGCATGTGGGGTAAAAGGAGAAAGCCCTAATTCATGGCAAATGAAAAGTTTAGAGGATGATGTTTATAGCTTTGGATTCATACTACTCGAGGCACTTGTTGGACCTTCAGTATCTTCTAAAAGAGAAGTAATTGTGCAGAATGTAATGGCATCTTTCAATAATCAAGATGGTTGGAAAGAGATAGTGGACCCAGTTGTGCAAGCTACTTGCTCTAGAGAATCACTATTGATTGTGATTTCCATAACAAACAAATGTATTTCTCCTGAGTCCTGTAGCAGACCATCCATAGAGGATGTCCTTTGGAACTTGCAGTATGCTTCTCAAGTTCAGGCAACAGCTGATGGGGATCAGAGAATTTGA 2289 0.3984 MGFHDLVLLLCSTWCVFYVGSCSAQLQPSQTQVLLQLKKQLEYPKQLEIWKDRWTELCSIPSSTQVNLTCKDNFVTELTILGDKPTKDRDFDGFAIPNQTLSQSFSMDSFVATLARLTSLRVLRLISLGIWGPLPNSIHRLFALEHLDLNSNYLYGSIPPKISTMVNLQTLRLGDNFFNGTIPSLFNSSSNLIVLSLKNNRLKGPFPPSILSITTLTDIDMSSNQISGSLQDFTGLSSLEQLDLRENRLDSELPAMPKGLIRLFLSINSFSGQIPKQYGQLNKLQQLDISFNALTGTAPAELFSLPNISYLNLASNMFGGTLQDHLICSSQLRFVDISHNRLVGGLPSSLSTESENRVVKSDGNCLSGSVQHQHSVSYCTEAHVKKKPQRVGVFVGVIVGILVIIVVLALCIVITCKRYCSRGMSEQHLLHKTVQDSYSAGFSSELITNARYVSEAAKLGKEDLPMCRSYSLEELKEATNNFDNSTFMGENIYGKLYRGKLDSGIQVVIRCLPLSKKYSIRNFKLRLNLLAKLRHPNLVSLLGHCIDGVLGENTTTKVFLIYECVSNGSFQTYLSGDSPGKVFNWSERLSVLISIAKAVHFLHTGTIPGFFKNRIKTNNILLTENWIAKLSDYGLSIISEETDACGVKGESPNSWQMKSLEDDVYSFGFILLEALVGPSVSSKREVIVQNVMASFNNQDGWKEIVDPVVQATCSRESLLIVISITNKCISPESCSRPSIEDVLWNLQYASQVQATADGDQRI 762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3187g00002 762 ProSiteProfiles Protein kinase domain profile. 482 749 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3187g00002 762 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 445 564 - -
Gabi3187g00002 762 Pfam Leucine rich repeat 167 226 IPR001611 GO:0005515
Gabi3187g00002 762 Gene3D Ribonuclease Inhibitor 27 259 IPR032675 -
Gabi3187g00002 762 SUPERFAMILY Protein kinase-like (PK-like) 465 747 IPR011009 -
Gabi3187g00002 762 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 260 384 - -
Gabi3187g00002 762 Pfam Protein tyrosine and serine/threonine kinase 488 743 IPR001245 GO:0004672|GO:0006468
Gabi3187g00002 762 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 565 762 - -
Gabi3187g00002 762 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 103 746 - -
Gabi3187g00002 762 Gene3D Ribonuclease Inhibitor 260 395 IPR032675 -
Gabi3187g00002 762 SMART LRR_typ_2 141 165 IPR003591 -
Gabi3187g00002 762 SMART LRR_typ_2 236 259 IPR003591 -
Gabi3187g00002 762 SMART LRR_typ_2 281 305 IPR003591 -
Gabi3187g00002 762 SUPERFAMILY L domain-like 29 371 - -
Gabi3187g00002 762 Gene3D Transferase(Phosphotransferase) domain 1 565 761 - -
Gabi3187g00002 762 Gene3D Phosphorylase Kinase; domain 1 445 563 - -
Gabi3187g00002 762 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 27 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3187g00002 Gabi-Chr3187 52517 56791 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3187g00002 9 694 Miscellaneous Gene Families AT5G14210 50.573 0.0 655
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Gabi3187g00002 PK_Tyr_Ser-Thr 4.2e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3187g00002 - - gmx:100802978 1251.11