Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3184g00062 ATGTACGACCCCATGAACATCTCCAACGAGATCGTCCCCGCCGAAGACAACGACGGCTCCGGCGCCGCTGCGGAGTCCGTGCACAACAACCACCTTCGCCTCATTCATTACGATTCGCATACCCTTGAAGACGGTAGCGGCGGAGTCGAAGATGTTTCCACCGACGCTGTGTATGTTTCTGGTGATGGAGGTCCTGACATGTCTATGCAGCACTGCGATGATTCTAGCAAGCTCACGCTTTCGTTTCGCGGCCAAGTTTATGTCTTCGATGTTACACCTGATAAGGTTCAAGCGGTGTTATTACTGTTGGGAGGATGTGAATTATCTTCGGGTTCGCAATGTGGGGAGATGTCGCCCCTAAATCAGAGGGGTGCCACTGAATATCCTGCAAGATGTAGTCAACCTCAGCGAGCAGCCTCTTTGAGTAGGTTCCGTCAAAAAAGGAAAGAGCGATGCTTTGACAAGAAAGTTAGATATAGTGTACGTCAAGAAGTTGCACTCAGGATGCATCGTAATAAGGGTCAATTTACGTCATCTAAGAAACAAGATGGAGCTAATAGTTGGGGTTCAGATCAAGAGTCGGTGCAGGATACTGTTCCGTCAGAAACCTTATGCACGCATTGTGGCATAAGTTCAAAATCCACCCCAATGATGCGGAGGGGGCCATGTGGTCCAAGGTCACTTTGCAATGCTTGCGGACTTTTTTGGGCAACCAGGGGTACTATGAGGGATCTTTCCAAGAGAAACCAGGAACATTCTCTTGCACAACCTGAGCAGGTTGATGAGGGTAATGACTTGGACTCTCGGACTGCTATTATCCCTGCACTTAACAATCTTGTTAATGATAACACTGCTTTGGTATCTGATCGTTGA 873 0.4834 MYDPMNISNEIVPAEDNDGSGAAAESVHNNHLRLIHYDSHTLEDGSGGVEDVSTDAVYVSGDGGPDMSMQHCDDSSKLTLSFRGQVYVFDVTPDKVQAVLLLLGGCELSSGSQCGEMSPLNQRGATEYPARCSQPQRAASLSRFRQKRKERCFDKKVRYSVRQEVALRMHRNKGQFTSSKKQDGANSWGSDQESVQDTVPSETLCTHCGISSKSTPMMRRGPCGPRSLCNACGLFWATRGTMRDLSKRNQEHSLAQPEQVDEGNDLDSRTAIIPALNNLVNDNTALVSDR 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3184g00062 290 Gene3D - 197 256 IPR013088 GO:0006355|GO:0008270
Gabi3184g00062 290 ProSitePatterns GATA-type zinc finger domain. 205 232 IPR000679 GO:0006355|GO:0043565
Gabi3184g00062 290 Pfam tify domain 75 104 IPR010399 -
Gabi3184g00062 290 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 199 250 - -
Gabi3184g00062 290 Pfam CCT motif 137 179 IPR010402 GO:0005515
Gabi3184g00062 290 PANTHER GATA TRANSCRIPTION FACTOR 28 35 261 IPR045280 GO:0006355
Gabi3184g00062 290 SMART GATA_3 199 252 IPR000679 GO:0006355|GO:0043565
Gabi3184g00062 290 CDD ZnF_GATA 205 250 IPR000679 GO:0006355|GO:0043565
Gabi3184g00062 290 SMART tify_2 71 105 IPR010399 -
Gabi3184g00062 290 ProSiteProfiles GATA-type zinc finger domain profile. 205 258 IPR000679 GO:0006355|GO:0043565
Gabi3184g00062 290 ProSiteProfiles Tify domain profile. 71 105 IPR010399 -
Gabi3184g00062 290 Pfam GATA zinc finger 205 242 IPR000679 GO:0006355|GO:0043565
Gabi3184g00062 290 MobiDBLite consensus disorder prediction 172 196 - -
Gabi3184g00062 290 ProSiteProfiles CCT domain profile. 137 179 IPR010402 GO:0005515
Gabi3184g00062 290 MobiDBLite consensus disorder prediction 178 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3184g00062 Gabi-Chr3184 467785 475136 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3184g00062 75 289 Tify Gene Family AT4G24470 56.356 5.38e-81 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gabi3184g00062 CCT 3.6e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3184g00062 - - pvu:PHAVU_008G182900g 379.022