Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3184g00061 ATGGCGGCCGTGAATCCACAGCCTCTGCGATTCGAGGACCCTGCGATACCCGTCGATGACGACGAGGTCGGTGAGTACGAGGATGGTGATGGTGGTGGTGGTGGTGATGCTATGGATGAGTTGGAGGAGGCAAATGCCAATTCAGTTAACGTTGCTGTGAGTGCAAATCATGGTCATGGGGCACTCGTTGTGCCTTCGCGTACTAGTGAGCTCACTCTTTCTTTTGAGGGTGAGGTTTACGTCTTTCCAGCAGTTACACCTCAAAAGGTGCAAGCTGTTTTACTGCTTTTGGGAGGACGTGATGTGCAGACAGCTGTCCCTACAGTTGAACTTCCCTTTGATGAAAGTAACACGGGAATGGATGATACTCCAAAGCGTTCAAACCTTTCACGACGAATCGCCTCCTTGGTCAGGTTCCGTGAAAAACGCAAGGAAAGATGTTTTGACAAGAAAATTAGGTACACTGTGAGAAAGGAGGTGGCACAGAGGATGCATCGGAAGAATGGGCAGTTTGCATCCGTGAAGGAAGGCTCAGGTTCATCTAATTGGGATTCTGCACAGAGTTCTGGTCAAGATGGCACTCCTCAATCTGAATCTGCACGTAGATGTCAACATTGTGGTGTCAGTGAAAATAACACTCCTGCAATGCGTCGTGGGCCAGCTGGACCAAGGACTTTGTGTAACGCATGCGGTCTTATGTGGGCTAACAAGGGTACACTCAGAGATCTCAGTAAGGGAGGAAGAAATCTTTCTGTTGAGCAAGGTGATCCGGACACTCCTTTTGATGTCAAGCCTACTGTTCTGGCAGGGGAATTGCCTGGCATCCATGATGAGCAAGGTATTTCTGAAGATCCTTCCAAGGCCATTGCTGCTGAAGGTTCTAATAATCATGCTGTAAACCCTAGGGATGAGGAATTGCCTGAATGTGCGAAGCACTTTACAAACAGTCTGCCACTGGGAATTGATCATTCTTCGGCAAATGATGATGAGCAGGAACCTCTGGTTGAGCTTTCTAATCCTTCAGACACGGATATTGACATCCCTGGAAACTTTGATTAG 1059 0.4816 MAAVNPQPLRFEDPAIPVDDDEVGEYEDGDGGGGGDAMDELEEANANSVNVAVSANHGHGALVVPSRTSELTLSFEGEVYVFPAVTPQKVQAVLLLLGGRDVQTAVPTVELPFDESNTGMDDTPKRSNLSRRIASLVRFREKRKERCFDKKIRYTVRKEVAQRMHRKNGQFASVKEGSGSSNWDSAQSSGQDGTPQSESARRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRNLSVEQGDPDTPFDVKPTVLAGELPGIHDEQGISEDPSKAIAAEGSNNHAVNPRDEELPECAKHFTNSLPLGIDHSSANDDEQEPLVELSNPSDTDIDIPGNFD 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3184g00061 352 MobiDBLite consensus disorder prediction 314 352 - -
Gabi3184g00061 352 MobiDBLite consensus disorder prediction 173 211 - -
Gabi3184g00061 352 ProSitePatterns GATA-type zinc finger domain. 203 230 IPR000679 GO:0006355|GO:0043565
Gabi3184g00061 352 SMART tify_2 64 99 IPR010399 -
Gabi3184g00061 352 MobiDBLite consensus disorder prediction 165 220 - -
Gabi3184g00061 352 PANTHER GATA TRANSCRIPTION FACTOR 28 16 345 IPR045280 GO:0006355
Gabi3184g00061 352 ProSiteProfiles Tify domain profile. 64 99 IPR010399 -
Gabi3184g00061 352 MobiDBLite consensus disorder prediction 1 39 - -
Gabi3184g00061 352 MobiDBLite consensus disorder prediction 18 37 - -
Gabi3184g00061 352 Pfam GATA zinc finger 203 239 IPR000679 GO:0006355|GO:0043565
Gabi3184g00061 352 Pfam tify domain 66 98 IPR010399 -
Gabi3184g00061 352 SMART GATA_3 197 250 IPR000679 GO:0006355|GO:0043565
Gabi3184g00061 352 Pfam CCT motif 132 174 IPR010402 GO:0005515
Gabi3184g00061 352 ProSiteProfiles GATA-type zinc finger domain profile. 197 253 IPR000679 GO:0006355|GO:0043565
Gabi3184g00061 352 ProSiteProfiles CCT domain profile. 132 174 IPR010402 GO:0005515
Gabi3184g00061 352 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 196 247 - -
Gabi3184g00061 352 CDD ZnF_GATA 202 246 IPR000679 GO:0006355|GO:0043565
Gabi3184g00061 352 Gene3D - 194 253 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3184g00061 Gabi-Chr3184 454737 462992 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3184g00061 3 245 Tify Gene Family AT1G51600 48.400 3.06e-68 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gabi3184g00061 CCT 1.3e-13 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3184g00061 - - gmx:100801328 549.28