Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3184g00008 ATGACCACTCTCACTCTCCAACTACGCTGTTATTCCCACCATCCCCTTCCATGGCTTCTTCTTCTTCTTCTTCTTTTTATCATACAGGTTCTGCCGCCGGCAACCGCACAACTACCAAATACTTTAACACCTCCACCGCCGGACATATTTAGTAACAAGCTTAAGTTCGATAAATCCATGGCGATCGTCCTGGTGATCCTGGTCGTTGTGTTCTTCATATTAGGCTTTCTTTCCATCTACACTCGCCAGTGTGCGGAGCAAAGTATCAGAGGGAGGCTAGACCTTGCTTTTCCGATCGCCGGAAGCCACCGGAGACCGCGCGGTTTGGACCAGGAGATCATCGACACCTTCCCCACCTTCGTCTACTCCACCGTGAAGGCTCTCAAGATTGGGAGGGCCACGCTAGAATGCGCCGTGTGCCTCAACGAGTTCGAAGACAACGAAACGCTGCGTTTGATCCCAAAGTGCAGCCACGTGTTCCATCCTGAATGCATAGACGCTTGGTTGGCCACTCACTCCACCTGTCCGGTTTGTCGGGCCAACCTCGTTCCAAGGCCCGGTGACACGTCATTCGTTGCGCTTCAGATCTCGGATCATGAAGGTAATGGATCCAGATCCGATTCGGATGACCAGCCCCGACAGGATACACGGGTCGAGGACGACAACAACAATCGCAACGAAACTGGAGTGGTAGCTGATTCTCCAAAGGTGAATACTAATTCAGTTAATCAGAACCGTTCACCTCGGACAAGGTCAACGGGGTTTAGGATCGGTAACTGGTTTCCGCGGTCTCACTCGACCGGTCACTCGCTGATTCAACCGGGCGAGAATTGCGAGCGGTTCACCCTGAGGTTGCCGGAGGAGGTGCGGAACCAGCTGGTGAACTCGACGCTGAGCCGGACCAAGAGTTGTGGCGTGACGTTTACGCGAGAGAACAGTGGGAGGAGGGATTACAGGACAAGAAGCGTGGGCAGCAGCGTTGCTGGAAGGACCGACGAACGGTTCGGCCGGCCGGACCGGTGGGAGTTCACTTGGACGCCACCGTTTATGAGTAAGGCCGGTTCGACCAGATCAGTGAAGGGTTCGGTGCCAATGGATGACGTGGAAGAACGATCTACGGATCGGCTATTTCCAGGTCGCGAGGATTAG 1149 0.5431 MTTLTLQLRCYSHHPLPWLLLLLLLFIIQVLPPATAQLPNTLTPPPPDIFSNKLKFDKSMAIVLVILVVVFFILGFLSIYTRQCAEQSIRGRLDLAFPIAGSHRRPRGLDQEIIDTFPTFVYSTVKALKIGRATLECAVCLNEFEDNETLRLIPKCSHVFHPECIDAWLATHSTCPVCRANLVPRPGDTSFVALQISDHEGNGSRSDSDDQPRQDTRVEDDNNNRNETGVVADSPKVNTNSVNQNRSPRTRSTGFRIGNWFPRSHSTGHSLIQPGENCERFTLRLPEEVRNQLVNSTLSRTKSCGVTFTRENSGRRDYRTRSVGSSVAGRTDERFGRPDRWEFTWTPPFMSKAGSTRSVKGSVPMDDVEERSTDRLFPGRED 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3184g00008 382 CDD RING-H2_EL5-like 136 179 - -
Gabi3184g00008 382 SMART ring_2 137 178 IPR001841 -
Gabi3184g00008 382 Pfam Ring finger domain 136 179 IPR001841 -
Gabi3184g00008 382 MobiDBLite consensus disorder prediction 363 382 - -
Gabi3184g00008 382 SUPERFAMILY RING/U-box 131 187 - -
Gabi3184g00008 382 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 99 184 IPR013083 -
Gabi3184g00008 382 PANTHER RING FINGER DOMAIN-CONTAINING 47 190 - -
Gabi3184g00008 382 ProSiteProfiles Zinc finger RING-type profile. 137 179 IPR001841 -
Gabi3184g00008 382 MobiDBLite consensus disorder prediction 202 226 - -
Gabi3184g00008 382 FunFam E3 ubiquitin-protein ligase ATL6 99 185 - -
Gabi3184g00008 382 MobiDBLite consensus disorder prediction 197 258 - -
Gabi3184g00008 382 MobiDBLite consensus disorder prediction 227 258 - -
Gabi3184g00008 382 MobiDBLite consensus disorder prediction 346 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3184g00008 Gabi-Chr3184 119391 124483 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3184g00008 8 363 Rapid Response to Elicitors AT3G05200 38.606 6.59e-67 215
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3184g00008 K10664 - qsa:O6P43_019600 370.163