Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3184g00007 ATGGCACTAGATGCTGTGGTTTTCCCACAAGATCCATTTACATATGGTTACAAGGATTGTTTATACTCCTTGGAATTTCAAGCAGCAGCAGCAGCAGAAGAAGAGAAATTTCTCCTTGGAATTATCAACAATAACATTGAACAGAGTCTCAATGCAAATTGGGATTCTTCTTCTACTTCGGTGTTCAAGGACCCATGGGATTCACACTCTTCCCCTGAGCCCTGCACCGTTGATCAATCTCTCACTTTACCTTTCCCTCCTCCTCCTCCTCCTCCTCTTCCTCTTCCTCCTTCCTCCGTGGAAGCCACCACATGTCGCCGTAAACGACGTCGCAGCACCAAGAGCGCCAAGAACAAGGAGGAAATCGAGAACCAGAGGATGACACACATTGCGGTTGAACGCAATCGCCGAAAACAGATGAATGAGTACCTTGCTGTTCTCCGATCCCTGATGCCTTCTTCTTATGTTCAAAGGGGTGACCAAGCGTCTATAGTTGGAGGAGCCATTAACTTTGTGAAGGAGCTAGAGCAGCTTTTGCAGTCTATGGAGGGGCAAAAGAAAACAAAACAAGCACAAGAGAATAATAATAATGGCTTAAATAATGGCTCGCTCTTCGGTGAGTTCTTCACGTTTCCTCAGTACACGATGCGTGAAACTCAGAACAACACAGCCACGTCGACCATGGCTCAGAACCAGGATCAGAAACATTTGGCCGTTGCAGACATTGAAGTGACCATGGTTGATAGCCATGCCAACTTAAAGATACTCTCAAAGAAACGACCCGGCCAGCTTATGCAAATGGTTGTCGGGCTTCAAAGTCTTAGGCTCAGCATTCTCCATCTTAACGTTACCACTGTGGATGATATGGTCCTTTACTCAGTCAGTGTAAAGATAGAGGACGGGTGTCAGCTGAATGCGGTGGATGAAATTGCTGCTGCTGTGAATCAACTATTACGTACTGTGCAATAA 969 0.4603 MALDAVVFPQDPFTYGYKDCLYSLEFQAAAAAEEEKFLLGIINNNIEQSLNANWDSSSTSVFKDPWDSHSSPEPCTVDQSLTLPFPPPPPPPLPLPPSSVEATTCRRKRRRSTKSAKNKEEIENQRMTHIAVERNRRKQMNEYLAVLRSLMPSSYVQRGDQASIVGGAINFVKELEQLLQSMEGQKKTKQAQENNNNGLNNGSLFGEFFTFPQYTMRETQNNTATSTMAQNQDQKHLAVADIEVTMVDSHANLKILSKKRPGQLMQMVVGLQSLRLSILHLNVTTVDDMVLYSVSVKIEDGCQLNAVDEIAAAVNQLLRTVQ 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3184g00007 322 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 124 175 IPR011598 GO:0046983
Gabi3184g00007 322 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 124 191 IPR036638 GO:0046983
Gabi3184g00007 322 CDD bHLH_AtFAMA_like 127 190 - -
Gabi3184g00007 322 Pfam Helix-loop-helix DNA-binding domain 125 176 IPR011598 GO:0046983
Gabi3184g00007 322 SMART finulus 130 181 IPR011598 GO:0046983
Gabi3184g00007 322 PANTHER MAX DIMERIZATION, MAD 69 320 - -
Gabi3184g00007 322 MobiDBLite consensus disorder prediction 61 122 - -
Gabi3184g00007 322 FunFam Basic helix-loop-helix transcription factor 115 190 - -
Gabi3184g00007 322 MobiDBLite consensus disorder prediction 81 98 - -
Gabi3184g00007 322 Coils Coil 172 195 - -
Gabi3184g00007 322 Gene3D - 106 195 IPR036638 GO:0046983
Gabi3184g00007 322 MobiDBLite consensus disorder prediction 61 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3184g00007 Gabi-Chr3184 98587 99952 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3184g00007 1 298 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 50.000 7.80e-78 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi3184g00007 HLH 2.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3184g00007 - - gmx:100805420 424.861