Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3184g00005 ATGGCGCTACAACGTCTTCTCTGCTTAACTTCAACAACTCAGTTATCCACTCAACACAATCTAAACTCTTTCTCTTCATCTTCCCAATCCATCAACTCAGTCACCAAAATCTCTTTTTGTCAACCACCCTCTTCGTTTCACCTTCTGCGTCTATCCCTCGCCCAAACCCCAAACCTTATTAGAACCAAACTCGCCTCTACTTCCTCAGAACAAACCCAAGAAACCGAGGAAGACAGTGAAGAATTTTCTCGGACCAGATTGCTCGCTCTGAACGTGCCTTGGACGAGTACCCCTGAAGATATTCGTTCTTTGTTCGAGAGACATGGGAAAGTCCTCCAAGTTGAGCTTTCTATGTATAACAAATCCAGAAACAGGGGTTTGGCGTTTGTCGAAATGGGTTCCCCTGAAGAGGCTCTTGCGGCTCTCAATAGTCTTGAATCGTATGAGTTTGAGGGTCGCATTATAAAACTCAATTATGCTCATATAAAAAAGAAGAAAACTCCACCCCCTGTGCAACGAAAGCCAGTAACATTTAACTTGTTTGTAGCAAACTTTTCCTATGAAGTGCGGTCTAACGATCTCAAGGAGTTTTTTGACTCGGGAAGTGGTAGAGTTGTTTCTGCAGAGGTTATATTTCATGAAAACCCTAGAAGATCATCTGGTTATGGATTTGTGTCCTTCAAGTCCAAGAAAGAAGCTGATGCAGCTCTTTCTGAGTTTGAAGGAAAGATTTTTATGGGGAGGCCAATCAGGGTGGCACGTAGTACGCGATTCGTTCAACAACCAGTAGAGGAGAGTGCAAGGTCTGAAGATAAATCTTCTGAGTTGAGTGTGAATGGGGAAGAAGCTGACAAAGCTGATTGA 864 0.434 MALQRLLCLTSTTQLSTQHNLNSFSSSSQSINSVTKISFCQPPSSFHLLRLSLAQTPNLIRTKLASTSSEQTQETEEDSEEFSRTRLLALNVPWTSTPEDIRSLFERHGKVLQVELSMYNKSRNRGLAFVEMGSPEEALAALNSLESYEFEGRIIKLNYAHIKKKKTPPPVQRKPVTFNLFVANFSYEVRSNDLKEFFDSGSGRVVSAEVIFHENPRRSSGYGFVSFKSKKEADAALSEFEGKIFMGRPIRVARSTRFVQQPVEESARSEDKSSELSVNGEEADKAD 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3184g00005 287 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 178 257 IPR000504 GO:0003723
Gabi3184g00005 287 SUPERFAMILY RNA-binding domain, RBD 73 172 IPR035979 GO:0003676
Gabi3184g00005 287 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 85 162 IPR000504 GO:0003723
Gabi3184g00005 287 Gene3D - 166 285 IPR012677 -
Gabi3184g00005 287 MobiDBLite consensus disorder prediction 264 287 - -
Gabi3184g00005 287 PANTHER OS02G0815200 PROTEIN 22 255 - -
Gabi3184g00005 287 MobiDBLite consensus disorder prediction 261 287 - -
Gabi3184g00005 287 SUPERFAMILY RNA-binding domain, RBD 168 259 IPR035979 GO:0003676
Gabi3184g00005 287 SMART rrm1_1 179 253 IPR000504 GO:0003723
Gabi3184g00005 287 SMART rrm1_1 86 158 IPR000504 GO:0003723
Gabi3184g00005 287 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 180 251 IPR000504 GO:0003723
Gabi3184g00005 287 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 91 155 IPR000504 GO:0003723
Gabi3184g00005 287 Gene3D - 56 165 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3184g00005 Gabi-Chr3184 82011 83874 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3184g00005 85 257 Eukaryotic Initiation Factors Gene Family AT3G16380 30.769 4.94e-15 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3184g00005 - - gmx:100806480 342.043