Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3183g00003 ATGTATCCAAAACGGTCTGGCCAAGATGGCCCTGTTTCCGGGCAGGTGCGCACAAGTGATAGGATCAAGTCAAGGCCAAACATGTATGGCCGACCATTCATGTATTACAACTCAAATCTTAGGCGCACCAGGAAAAGCAAGAACAAGACAAGGACAGCAGCTTCACAGATTGCCAAGATGTTGCGTCCAGGGAATCGGAAAGGAAAAGATTTGAATACTGATTCTGGCTCTGCCAACCTTAGGCGTTCAACTAGGAAGAGAAGGCTTAATGTAAATCTTGAAGATTTCACAGACAGCTCTGGAGCTGAGGATGAAGACTTAATGAGACCTGCATATCAACCATTGAGAAACCGGATTAGCATTAGCGTCAGCCGGGATGATTTGATGTCTACTAAACGCAAAAGAGCAATGGAGAAACCTACACCTCGGCGTGAAGGTCTACGACCACGTCGCTCAAAGGCTGGCGCAAGAGAACGATTAATTTTAGAATCAGATGATGAGCAAGAGCTTTCAGAAGAGAAGGTTGAACAAGATGAAACAGAAAATGGAAATGATGTTGAGGAAAATGATGCAGATGATGATCAAAATGAGATTGAGGTGGACGCTGAGGGTGAGGATGAAGGTGAGGACGAAGGTGATGAAGATGGTGATGATGAAGAAGGTGAAGAAGAGCAGGATGGAAGAAGGCGCTATGATCTTCGAAATCGTTCAGATGTCCGCAGGTTCTCTATGGAGGAAGGGAAGGCCCGACAAAGATCTCCTCGAAGAGTGTTACATCAAGGTATGGGAACTAAAGTCAGCAGGGATGTAAGGAAGGGTGGTTCACGTGTTCATAAGCGTCATCACATAACAAGGCCTGAAGATTCTGATGACTCCCTTCTTGTGGATGAGCTGGACCAAGGCCCTGCTATTCCATGGGGGCGAGGTGGCAGCAGATCTGGCCCACCTTGGCTTTTCGGGGGCTTAGACATGCATGGAACATCTTGGGGATTAAATCTTGCTGCATCAGGTTGGGGTCACCAGGGTGATGCTTTGTCTACTCTAACTTCTGGGATTCAAACTGCTGGACCAAGTTCTAAGGGAGGAGCAGATATCCAACCCTTACAGGTTGATGATAATGTTAGTTTTGAAGATATAGGTGGGCTCTCTGAATACATTGATGCTCTAAAGGAAATGGTTTTCTTTCCATTATTATACCCAGATTTCTTTGCAAGTTACCACATTACTCCACCTAGAGGGGTGTTGTTATGTGGACCCCCTGGTACAGGGAAAACATTAATTGCAAGAGCTTTGGCTTGTGCTGCTTCAAAAGCTGGCCAGAAAGTTAGCTTTTACATGTGCAAGGGAGCAGATGTACTAAGCAAGTGGGTTGGTGAGGCTGAAAGACAATTGAAACTACTCTTTGAGGAAGCACAACGGAATCAACCTTCTATTATCTTCTTTGATGAAATAGATGGACTTGCACCTGTGAGGTCTAGCAAGCAAGAACAAATTCACAATTCCATTGTGTCCACTTTGCTTGCTTTGATGGATGGTCTTGATTCTCGTGGACAAGTTGTTTTAATTGGAGCTACCAACAGGATTGATGCTATTGATGGAGCCTTGCGACGTCCTGGTAGATTTGATCGTGAATTTAACTTTCCCTTGCCTGGTTGTGAGGCACGTGCTGAAATATTAGACATTCATACTCGTAAGTGGAAGCATCCTCCTCCAAAGGAACTGAAAAAGGAACTTGCAGCTAGTTGTGTTGGTTACTGTGGTGCTGACCTAAAGGCACTCTGTACAGAAGCTGCCATTCATGCTTTCCGTGAAAAATTTCCACAGGTTTATACCAGTGATGACAAATTTCTCATAGATGTTGATTCTGTCAGGGTAGAAAAGTATCATTTTATTGAAGCTATGTCTACAATCACTCCTGCTGCTCATAGGGGAGCTATTGTGCACTCTAGGCCATTGTCTCTCGTAGTTCAACCATGTCTTCAGAGACATCTAGAGAAAGCCATGAGTATTATATCTGATATTTTCCCTCCAGTTTCTGTTGCATCAGAATTGACCAAACTTTCGATGCTTTCTTATGGGTCTGCAATTCCACTTGTGTATCGGCCTAGGCTTCTACTTTGTGGTGGTGAAGGTACAGGGCTGGATCATCTTGGCCCTGCGGTTTTACATGAACTGGAAAAATATCCTGTACATTCATTAGGACTTCCATCTCTTCTGTCAGATCCGAGTGCAAAGACACCGGAAGAAGCATTGGTACATATATTTGGTGAAGCTAGAAGAACAACTCCATCAATTCTCTATTTACCACAGTTTGATGTTTGGTGGGAAACTGCTCATGAACAACTCAGAGCTGTTCTCCTGACTTTGCTAGAAGAATTGCCATCTGACTTACCTATCTTACTACTCGGGACATCCTCAGTTGCACTTGCTGAAGTAGAGGAAGTCCCTCCTTCAGTTTTCCCTCATCGCTCAGTTTATCAAGTGAGCATGCCATCTACGAAAGATAGGACTTTGTTTTTCAATCATTTAATAGAAGCTGCTATGTCAGTATTGTTGGAGGGAATCAGCAAGAAATCCCAGGATACAGGATGCCTTCCTGAACTTCCCAAGGCACCAAAATTGGCTAGTGGTCCGAAGGTATCTGAGCTAAAAGCAAAGGTGGAAGCAGAGCAACATGCACTTCGGAGATTGCGAATGTGCCTTAGAGATGTTTGCAATCGGTATGTCAACCTATGCTTAATTTACAATTGTGCATGGGATGCTGTGTCCAACCTGAGGTTAATACGAGTGCTCGACTTCATGAGTTATGAAGTATTGAAGCGGAATAAGAAGATCACGGATGTTGTGCATGCAGCAGAAGACAAGTCACAAGAAGATTCTGTACCATCAAAGTCTTCGCAGGAGCATCAGGCAAATGACATAAATTCTGAAAGGCTGGAACCAAAAATATCAATTGATGCAAATTTGCAGGGAACTTGTACAAATAGCCTTGCTGATCGCAGCAGTCTTGATGATGTCACAATGCTAGATGGTGAATTTTCAAGACAAGTGGAGTCTGTCAAGAAGCTTTTTGTCAAACGTAGTGAAAATTACAGCATTCCACAACTTGAAAGGCTTTACACGAGAATTATGAAGGGCGTTTTTGAAACCAAAGATAAAGGAACGAATGATGATATCAAGACTTCGGTTTTGAGGTTTTTATTGAATTTTGTAGAGGATGATGCAAATTTCTGA 3234 0.4348 MYPKRSGQDGPVSGQVRTSDRIKSRPNMYGRPFMYYNSNLRRTRKSKNKTRTAASQIAKMLRPGNRKGKDLNTDSGSANLRRSTRKRRLNVNLEDFTDSSGAEDEDLMRPAYQPLRNRISISVSRDDLMSTKRKRAMEKPTPRREGLRPRRSKAGARERLILESDDEQELSEEKVEQDETENGNDVEENDADDDQNEIEVDAEGEDEGEDEGDEDGDDEEGEEEQDGRRRYDLRNRSDVRRFSMEEGKARQRSPRRVLHQGMGTKVSRDVRKGGSRVHKRHHITRPEDSDDSLLVDELDQGPAIPWGRGGSRSGPPWLFGGLDMHGTSWGLNLAASGWGHQGDALSTLTSGIQTAGPSSKGGADIQPLQVDDNVSFEDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMCKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRIDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKHPPPKELKKELAASCVGYCGADLKALCTEAAIHAFREKFPQVYTSDDKFLIDVDSVRVEKYHFIEAMSTITPAAHRGAIVHSRPLSLVVQPCLQRHLEKAMSIISDIFPPVSVASELTKLSMLSYGSAIPLVYRPRLLLCGGEGTGLDHLGPAVLHELEKYPVHSLGLPSLLSDPSAKTPEEALVHIFGEARRTTPSILYLPQFDVWWETAHEQLRAVLLTLLEELPSDLPILLLGTSSVALAEVEEVPPSVFPHRSVYQVSMPSTKDRTLFFNHLIEAAMSVLLEGISKKSQDTGCLPELPKAPKLASGPKVSELKAKVEAEQHALRRLRMCLRDVCNRYVNLCLIYNCAWDAVSNLRLIRVLDFMSYEVLKRNKKITDVVHAAEDKSQEDSVPSKSSQEHQANDINSERLEPKISIDANLQGTCTNSLADRSSLDDVTMLDGEFSRQVESVKKLFVKRSENYSIPQLERLYTRIMKGVFETKDKGTNDDIKTSVLRFLLNFVEDDANF 1077
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3183g00003 1077 FunFam ATPase family, AAA domain-containing 2 372 555 - -
Gabi3183g00003 1077 Gene3D - 682 845 IPR027417 -
Gabi3183g00003 1077 Pfam ATPase family associated with various cellular activities (AAA) 414 549 IPR003959 GO:0005524|GO:0016887
Gabi3183g00003 1077 MobiDBLite consensus disorder prediction 123 290 - -
Gabi3183g00003 1077 Gene3D - 372 642 IPR027417 -
Gabi3183g00003 1077 FunFam ATPase family AAA domain-containing protein 2B 550 635 - -
Gabi3183g00003 1077 MobiDBLite consensus disorder prediction 952 977 - -
Gabi3183g00003 1077 MobiDBLite consensus disorder prediction 1 29 - -
Gabi3183g00003 1077 PANTHER AAA DOMAIN-CONTAINING 955 1057 IPR045199 -
Gabi3183g00003 1077 MobiDBLite consensus disorder prediction 62 81 - -
Gabi3183g00003 1077 MobiDBLite consensus disorder prediction 223 253 - -
Gabi3183g00003 1077 MobiDBLite consensus disorder prediction 127 164 - -
Gabi3183g00003 1077 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 373 638 IPR027417 -
Gabi3183g00003 1077 Gene3D - 550 635 - -
Gabi3183g00003 1077 MobiDBLite consensus disorder prediction 165 222 - -
Gabi3183g00003 1077 ProSitePatterns AAA-protein family signature. 519 537 IPR003960 GO:0005524|GO:0016887
Gabi3183g00003 1077 SMART AAA_5 410 551 IPR003593 GO:0016887
Gabi3183g00003 1077 MobiDBLite consensus disorder prediction 92 111 - -
Gabi3183g00003 1077 Pfam AAA+ lid domain 576 613 IPR041569 -
Gabi3183g00003 1077 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 698 847 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3183g00003 Gabi-Chr3183 38731 46426 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3183g00003 360 614 Calmodulin-binding Proteins AT3G56690 37.452 5.79e-42 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3183g00003 K22531 - gmx:100787765 1560.81