Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3180g00003 ATGGATGGTAACCCTTACCCTCCTCCTTATGGAAACGTGGCTCCACCTCCTCCTATTCAAGTCCCTGATGATAATCAGTTTGTTGTGTCCTCCTCCTCAGCAACCCCAACCCCAACTGGATCATCATCATCTCCAATAATAAGTGAACGTCATGCCACCGTGCGTTACCGTGGAACCCGTTCTCGGAGTGGGAAATGGGTGTCTGAGATACGTGAGCCACGTAAAACGACACGCATTTGGCTCGGAACATACCCAACAGCTGAAATGGCTGCAGCTGCTTATGATGTTGCTGCTCTCGCTTTGAAAGGCCCTGACACTCCTCTCAACTTCCCCAATTCCATTCTCTCTTACCCGATTCCTGCTTCCTTATCTGCATCTGATATACGTGCTGCTGCTGCTGCTGCTGCTCAAGCTAGGCAAGTGAACATGACACCACAACAACAAACTGCACAAGGAGGAGGACAACCACAACAACAACAACAACAGTACCCTTTTTCTGCACTTGAGAGCTCTTCCAGTGGACAAGTTGAGCAATACATTGATGAAGATGAGCTTCTGAACATGCCGAATTTGCTTGATGATATGGCCAGGGGAATGCAAGTTAGCCCTCCCAGGATTACTTCCTTTTCTTCTGATGATTCTCCTGGGAATTCTGATGGAGATAACCTTTGGAGTTATACTTACTGA 687 0.4774 MDGNPYPPPYGNVAPPPPIQVPDDNQFVVSSSSATPTPTGSSSSPIISERHATVRYRGTRSRSGKWVSEIREPRKTTRIWLGTYPTAEMAAAAYDVAALALKGPDTPLNFPNSILSYPIPASLSASDIRAAAAAAAQARQVNMTPQQQTAQGGGQPQQQQQQYPFSALESSSSGQVEQYIDEDELLNMPNLLDDMARGMQVSPPRITSFSSDDSPGNSDGDNLWSYTY 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3180g00003 228 MobiDBLite consensus disorder prediction 1 22 - -
Gabi3180g00003 228 FunFam Ethylene-responsive transcription factor 2 54 112 - -
Gabi3180g00003 228 Gene3D AP2/ERF domain 54 113 IPR036955 GO:0003700|GO:0006355
Gabi3180g00003 228 MobiDBLite consensus disorder prediction 203 228 - -
Gabi3180g00003 228 SUPERFAMILY DNA-binding domain 56 113 IPR016177 GO:0003677
Gabi3180g00003 228 ProSiteProfiles AP2/ERF domain profile. 55 111 IPR001471 GO:0003700|GO:0006355
Gabi3180g00003 228 Pfam AP2 domain 60 103 IPR001471 GO:0003700|GO:0006355
Gabi3180g00003 228 MobiDBLite consensus disorder prediction 24 49 - -
Gabi3180g00003 228 MobiDBLite consensus disorder prediction 142 177 - -
Gabi3180g00003 228 MobiDBLite consensus disorder prediction 201 228 - -
Gabi3180g00003 228 CDD AP2 55 113 IPR001471 GO:0003700|GO:0006355
Gabi3180g00003 228 SMART rav1_2 55 117 IPR001471 GO:0003700|GO:0006355
Gabi3180g00003 228 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 39 199 - -
Gabi3180g00003 228 MobiDBLite consensus disorder prediction 1 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3180g00003 Gabi-Chr3180 22830 23516 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3180g00003 47 226 AP2-EREBP Transcription Factor Family AT5G52020 53.846 2.40e-50 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gabi3180g00003 AP2 4.8e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3180g00003 - - gmx:100776717 234.958