Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3180g00002 ATGATTCCCTTTAATCATTTTTCCGATAACTCTGAGATTTCATCATCGTCGCCGGTGTCGGTCGGTTCTCGAAAGGCGCTGTCCGACGAGGAGGTGTTCCTGGCGGCGAGCCACCCGAAGAAGCGCGCAGGGAGGAAGAAGTTCAGGGAGACACGGCATCCGGTGTACCGGGGAGTGAGGAAGAGGAACTCCGGCAAGTGGGTGTGCGAGGTGAGGGAGCCCAACAAGAAGACCAGGATTTGGCTGGGGACCTTCCCCACGGCGGAAATGGCGGCGCGTGCACACGACGTGGCGGCGATTGCGCTCAGGGGGAGGTCAGCCTGCCTCAACTTCGCGGACTCCGCGTGGCGATTGCCGGTACCGGCGACGTCGGAGGCTAGAGATATCCAGAAAGCGGCGGCAGAAGCGGCGGAGGTGTTCCGGCCGGGGACTGTGTTGGAGACAGATGAGGGGAGGAAGGATAGTGAGTCTGCAGTGGCGGTGGCGGTTGCGGAGGAGGCGACGGTGATGACGGAGGAACAAGGAGAAGGAGAAGATGTGCCGGAGTATCTGAGGAACATGGTGCTCCTGTCACCAACACATTATTGGGAGAGTGAATATGGCACTGCCGACGTGGAATTTGAAGATGCTGAAGTTTCATTGTGGAGTTATTCAATTTAA 660 0.5818 MIPFNHFSDNSEISSSSPVSVGSRKALSDEEVFLAASHPKKRAGRKKFRETRHPVYRGVRKRNSGKWVCEVREPNKKTRIWLGTFPTAEMAARAHDVAAIALRGRSACLNFADSAWRLPVPATSEARDIQKAAAEAAEVFRPGTVLETDEGRKDSESAVAVAVAEEATVMTEEQGEGEDVPEYLRNMVLLSPTHYWESEYGTADVEFEDAEVSLWSYSI 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3180g00002 219 MobiDBLite consensus disorder prediction 1 21 - -
Gabi3180g00002 219 CDD AP2 56 114 IPR001471 GO:0003700|GO:0006355
Gabi3180g00002 219 PRINTS Ethylene responsive element binding protein signature 78 94 IPR001471 GO:0003700|GO:0006355
Gabi3180g00002 219 PRINTS Ethylene responsive element binding protein signature 56 67 IPR001471 GO:0003700|GO:0006355
Gabi3180g00002 219 Pfam AP2 domain 54 104 IPR001471 GO:0003700|GO:0006355
Gabi3180g00002 219 MobiDBLite consensus disorder prediction 7 21 - -
Gabi3180g00002 219 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 7 217 IPR045277 GO:0003700
Gabi3180g00002 219 SMART rav1_2 55 118 IPR001471 GO:0003700|GO:0006355
Gabi3180g00002 219 SUPERFAMILY DNA-binding domain 55 114 IPR016177 GO:0003677
Gabi3180g00002 219 Gene3D AP2/ERF domain 55 113 IPR036955 GO:0003700|GO:0006355
Gabi3180g00002 219 ProSiteProfiles AP2/ERF domain profile. 55 112 IPR001471 GO:0003700|GO:0006355
Gabi3180g00002 219 FunFam Ethylene-responsive transcription factor 2 54 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3180g00002 Gabi-Chr3180 8397 9303 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3180g00002 4 217 AP2-EREBP Transcription Factor Family AT4G25470 56.444 6.87e-71 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gabi3180g00002 AP2 3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3180g00002 - - gmx:100101894 293.508