Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3177g00039 ATGGCAGAAGAAGAAGAAGAAGAAACTGTTCATAGAAAGCACTACAAACCCAACGATCCTCTTTCTCTTCTTCTTCAATGTGCAGACTTGGTACTACCATGGCTAACCCCAACAGAACTCGCCAACATTTCCATCTGCTGCAAATCCCTTCGCAAAATCTCCAACTCCATCACTCTCCACCGCTCCTCCGATGCTTCTAGAACCTTCGAGAACTTTCCAATCCCATTTCATAACACCGTCGATGACCACCCTTACGCTCACTTCCTCTACACCCCTTCCTTCCACTTTCCCTCCCACCAGCTCTTGCGTCAACCTTGGGGCTCTTCCGTAATTTCACCTTCCGCGCCGAGTCAGCTTCGGTCGGAATCGGTGAGTCTGGTTGACGAGTTGGGTCGTAGCGTGATGTCTGGGTGTGACTGCTGCGAGGCTTGTGGGGATTCGGGTTGTCCGTGTTTGGGGTTGGATGGGTTGGATGACGTGGGAAGGGAGTGTGGACCGGGTTGCCGGTGTGGACCGGAGTGTGGGAACCGGTCGAGCCAGAAAGGGGTTGCGGTTCGGGTGAAGATTGTGAGGGATGAGAGGAAAGGGTGGGGTGTGTGGGCTGACCAGTTCATTCGGAAAGGGGAATTCGTGTTTGAGTATGCAGGTGAACTCTTGACAACCAAGGAAGCACAAAGCAGACATCAGTATTATGATGAACTTGCATTGCATGGTCGTTTCTCTTCTGCTCTTTTAGTTGTAAGGGAGCATCTTCCATCTGGAAAGGCATGCTTGCGATCGAACATTGATGCCACAAGAATAGGAAATGTGGCACGGTTTGTTAATCATTCATGTGACGGTGGGACTTTAAGCACAAAGCTAGTTAGAAGTTCAGGAGCTTTGTTCCCCCGCCTTTGCTTCTTTGCTTTGAAAGATATCCAACACGATGAAGAGCTTACTTTTAGCTATGGAGAAACAAGGAAAAGGCCCAATGGTTTGCCATGCTTTTGCAACAGCCCTTCTTGCTTTGGAACATTGCCCTCAGAAGACACTTGA 1035 0.4957 MAEEEEEETVHRKHYKPNDPLSLLLQCADLVLPWLTPTELANISICCKSLRKISNSITLHRSSDASRTFENFPIPFHNTVDDHPYAHFLYTPSFHFPSHQLLRQPWGSSVISPSAPSQLRSESVSLVDELGRSVMSGCDCCEACGDSGCPCLGLDGLDDVGRECGPGCRCGPECGNRSSQKGVAVRVKIVRDERKGWGVWADQFIRKGEFVFEYAGELLTTKEAQSRHQYYDELALHGRFSSALLVVREHLPSGKACLRSNIDATRIGNVARFVNHSCDGGTLSTKLVRSSGALFPRLCFFALKDIQHDEELTFSYGETRKRPNGLPCFCNSPSCFGTLPSEDT 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3177g00039 344 SMART set_7 185 323 IPR001214 GO:0005515
Gabi3177g00039 344 Pfam SET domain 196 317 IPR001214 GO:0005515
Gabi3177g00039 344 ProSiteProfiles Post-SET domain profile. 324 340 IPR003616 -
Gabi3177g00039 344 ProSiteProfiles SET domain profile. 185 317 IPR001214 GO:0005515
Gabi3177g00039 344 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 45 333 - -
Gabi3177g00039 344 Gene3D SET domain 45 324 IPR046341 -
Gabi3177g00039 344 SUPERFAMILY SET domain 71 337 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3177g00039 Gabi-Chr3177 462622 465497 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3177g00039 163 339 C2H2 Transcription Factor Family AT2G23740 32.620 9.56e-23 97.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gabi3177g00039 SET 7.3e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3177g00039 K11433 - gmx:100786871 508.834