Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3177g00038 ATGGCAGAAGAAGAAGAAGAAGAAACTGTTCATAGAAAGCACTACAAACCCAACGATCCTCTTTCTCTTCTTCTTCAATGTGCAGACTTGGTACTACCATGGCTAACCCCAACAGAACTCGCCAACATTTCCATCTGCTGCAAATCCCTTCGCAAAATCTCCAACTCCATCACTCTCCACCGCTCCTCCGATGCTTCTAGAACCTTCGAGAACTTTCCAATCCCATTTCATAACACCGTCGATGACCACCCTTACGCTCACTTCCTCTACACCCCTTCCTTCCACTTTCCCTCCCACCAGCTCTTGCGTCAACCTTGGGGCTCTTCCGTAATTTCACCTTCCGCGCCGAGTCAGCTTCGGTCGGAATCGGTGAGTCTGGTTGACGAGTTGGGTCGTAGCGTGATGTCTGGGTGTGACTGCTGCGAGGCTTGTGGGGATTCGGGTTGTCCGTGTTTGGGGTTGGATGGGTTGGATGACGTGGGAAGGGAGTGTGGACCGGGTTGCCGGTGTGGACCGGAGTGTGGGAACCGGTCGAGCCAGAAAGGGGTTGCGGTTCGGGTGAAGATTGTGAGGGATGAGAGGAAAGGGTGGGGTGTGTGGGCTGACCAGTTCATTCGGAAAGGGGAATTCGAAGCACAAAGCAGACATCAGTATTATGATGAACTTGCATTGCATGGTCGTTTCTCTTCTGCTCTTTTAGTTGTAAGGGAGCATCTTCCATCTGGAAAGGCATGCTTGCGATCGAACATTGATGCCACAAGAATAGGAAATGTGGCACGGTTTGTTAATCATTCATGTGACGGTGGGACTTTAAGCACAAAGCTAGTTAGAAGTTCAGGAGCTTTGTTCCCCCGCCTTTGCTTCTTTGCTTTGAAAGATATCCAACACGATGAAGAGCTTACTTTTAGCTATGGAGAAACAAGGAAAAGGCCCAATGGTTTGCCATGCTTTTGCAACAGCCCTTCTTGCTTTGGAACATTGCCCTCAGAAGACACTTGA 999 0.4975 MAEEEEEETVHRKHYKPNDPLSLLLQCADLVLPWLTPTELANISICCKSLRKISNSITLHRSSDASRTFENFPIPFHNTVDDHPYAHFLYTPSFHFPSHQLLRQPWGSSVISPSAPSQLRSESVSLVDELGRSVMSGCDCCEACGDSGCPCLGLDGLDDVGRECGPGCRCGPECGNRSSQKGVAVRVKIVRDERKGWGVWADQFIRKGEFEAQSRHQYYDELALHGRFSSALLVVREHLPSGKACLRSNIDATRIGNVARFVNHSCDGGTLSTKLVRSSGALFPRLCFFALKDIQHDEELTFSYGETRKRPNGLPCFCNSPSCFGTLPSEDT 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3177g00038 332 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 39 321 - -
Gabi3177g00038 332 Pfam SET domain 249 305 IPR001214 GO:0005515
Gabi3177g00038 332 SUPERFAMILY SET domain 71 325 IPR046341 -
Gabi3177g00038 332 SMART set_7 185 311 IPR001214 GO:0005515
Gabi3177g00038 332 Gene3D SET domain 58 328 IPR046341 -
Gabi3177g00038 332 ProSiteProfiles Post-SET domain profile. 312 328 IPR003616 -
Gabi3177g00038 332 ProSiteProfiles SET domain profile. 185 305 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3177g00038 Gabi-Chr3177 462622 465497 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3177g00038 64 323 EF-hand Containing Proteins AT5G13960 27.070 5.25e-19 85.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gabi3177g00038 SET 2.6e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3177g00038 K11433 - gmx:100786871 479.174