Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3177g00023 ATGGACAGGCTCATAAAGTTAGACCCATCAAACATAGTCCTAATAAGAGTTGAACCAGGGCAAAAATGCTATGGCAGAATCACCTTAAGCAATGTCATGTACACTATGCCAGTGGCATTTAGGCTTCATCCATTGATCAAAACCCGTTATACAGTGAAGCCCTATTCAGGGATCATATCCCCTTTGGCAACACTCACCATAGAGATCATCTATAATCTCCCACCAGGCTCTAATCTCCCTTACTCTTTTCCTCACTCAGATGATTCTTTCCTCTTGCATAGTGTTCTTGTTCCTGGTGCTACCATCAAAGAACCTTCCTCCATGTATGATGCTGTTCCAAGTGACTGGTTCACCACAAAAAAAAAACAAGTCTTCATTGACAGTGGCATCAAAGTCATGTTTGTGGGGTCGCAGATTCTGGCTCATTTGGTTGCAGATGGTTCAATGGATGACATAAGAGAGGTACTTGAAAGAAGTGACCCTTCATGGAAAGCTGTGGATTCCACAGACCCACAAGGCCAAACTTTACTTCACTTGGCCATTTCAAAATGTAGAGCTGATCTTGTTCAATTACTCCTAGAATTTGAGCCTGATATAGAAACTCCAAGCCGTTCTGGCTCAACCCCACTTGAGGCTGCATCTTCCTCTGGTGAAGCCTTAATTGTTGAGCTTCTTTTGGCTCACAGGGCCAGCACACAACGATCAGAATCATCTATGTTTGGGCCAATCCACAATGCAGCTAGAGGAGGACACATGGAGGTTCTGAGGCTTCTCTTACTCAAAGGTGCCAAAGTGGATGCACTCACAAAAGATGGTAACACAGCCTTGCACCTTGCTGTTGAAGAGCGTAGAAGAGACTGTGCTAGGCTTCTACTTGCAAATGGTGCAAGAACAGATGTTGGAAACACCAGAGAAGGTGACACTCCTCTGCACATAGCAGCAGCCATAGGAGATGAGAACATGGTCAAACTCTTGCTGCAAAAGGGTGCAAACAAAGATGTGAGGAATGCACTAGGTAAGACAGCATACGATCTTGCAGCAGAAAACGGCCATGGACGCCTCTTCGACGCGCTTCGTTTGGGAGACAACTTGTGCGTGGCTGCGAGAAAAGGGGAAGTGAGGACAATCCAGAGGCTACTTGAGAGAGGAGCAACCATCAATGGAAGGGACCAACATGGTTGGACAGCACTGCATAGAGCCTCATTCAAAGGTATAATAGATGCAGTTCGGATTCTAGTTGAGAAAGGGATCGATGTGGATGCAAAGGATGAAGATGGTTATACAGCATTGCACTGTGCAGCTGAGTCAGGCCATGCAGATGTGACAGAGTTTTTGGTGAAGAAAGGTGCAGATGTTGAAGCCAGAACAAGCAAGGGTGTGACTGCATTGCAAATAGCAGAGTCATTGCACTATGTTGGGATTACAAGGATACTTGTTAATGGTGGAGCTAGTAAGGATAATGTGGATCAAATACCTGCACCTACTGCTATTCCATTTGGGAGTAAAATGGAAGCTGAGGGTGTTATGAAGAAGAAAAAGAAGAACATGGGTAGAACCAGAGTGCTAAGGGGTAGCTTTGATCGTTCAACGGCTTTGGTTGTGCTCTAG 1608 0.4534 MDRLIKLDPSNIVLIRVEPGQKCYGRITLSNVMYTMPVAFRLHPLIKTRYTVKPYSGIISPLATLTIEIIYNLPPGSNLPYSFPHSDDSFLLHSVLVPGATIKEPSSMYDAVPSDWFTTKKKQVFIDSGIKVMFVGSQILAHLVADGSMDDIREVLERSDPSWKAVDSTDPQGQTLLHLAISKCRADLVQLLLEFEPDIETPSRSGSTPLEAASSSGEALIVELLLAHRASTQRSESSMFGPIHNAARGGHMEVLRLLLLKGAKVDALTKDGNTALHLAVEERRRDCARLLLANGARTDVGNTREGDTPLHIAAAIGDENMVKLLLQKGANKDVRNALGKTAYDLAAENGHGRLFDALRLGDNLCVAARKGEVRTIQRLLERGATINGRDQHGWTALHRASFKGIIDAVRILVEKGIDVDAKDEDGYTALHCAAESGHADVTEFLVKKGADVEARTSKGVTALQIAESLHYVGITRILVNGGASKDNVDQIPAPTAIPFGSKMEAEGVMKKKKKNMGRTRVLRGSFDRSTALVVL 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3177g00023 535 Gene3D - 135 303 IPR036770 -
Gabi3177g00023 535 ProSiteProfiles Ankyrin repeat region circular profile. 238 267 - -
Gabi3177g00023 535 ProSiteProfiles Ankyrin repeat region circular profile. 425 455 - -
Gabi3177g00023 535 Pfam Ankyrin repeats (3 copies) 160 231 IPR002110 GO:0005515
Gabi3177g00023 535 Pfam Ankyrin repeats (3 copies) 242 298 IPR002110 GO:0005515
Gabi3177g00023 535 Pfam Ankyrin repeats (3 copies) 301 358 IPR002110 GO:0005515
Gabi3177g00023 535 Pfam Ankyrin repeats (3 copies) 364 455 IPR002110 GO:0005515
Gabi3177g00023 535 ProSiteProfiles Ankyrin repeat region circular profile. 172 200 - -
Gabi3177g00023 535 ProSiteProfiles Ankyrin repeat region circular profile. 271 302 - -
Gabi3177g00023 535 Gene3D - 304 359 IPR036770 -
Gabi3177g00023 535 ProSiteProfiles Ankyrin repeat profile. 205 237 IPR002110 GO:0005515
Gabi3177g00023 535 ProSiteProfiles Ankyrin repeat profile. 392 424 IPR002110 GO:0005515
Gabi3177g00023 535 ProSiteProfiles Ankyrin repeat profile. 364 391 IPR002110 GO:0005515
Gabi3177g00023 535 ProSiteProfiles Ankyrin repeat region circular profile. 305 336 - -
Gabi3177g00023 535 ProSiteProfiles Ankyrin repeat region circular profile. 392 424 - -
Gabi3177g00023 535 ProSiteProfiles Ankyrin repeat profile. 172 204 IPR002110 GO:0005515
Gabi3177g00023 535 ProSiteProfiles Ankyrin repeat profile. 305 337 IPR002110 GO:0005515
Gabi3177g00023 535 ProSiteProfiles Ankyrin repeat profile. 425 457 IPR002110 GO:0005515
Gabi3177g00023 535 ProSiteProfiles Major sperm protein (MSP) domain profile. 4 135 IPR000535 -
Gabi3177g00023 535 PANTHER ANKYRIN REPEAT, PH AND SEC7 DOMAIN CONTAINING PROTEIN SECG-RELATED 238 492 - -
Gabi3177g00023 535 Gene3D Immunoglobulins 1 134 IPR013783 -
Gabi3177g00023 535 ProSiteProfiles Ankyrin repeat profile. 271 303 IPR002110 GO:0005515
Gabi3177g00023 535 Gene3D - 430 480 IPR036770 -
Gabi3177g00023 535 SMART ANK_2a 305 334 IPR002110 GO:0005515
Gabi3177g00023 535 SMART ANK_2a 172 201 IPR002110 GO:0005515
Gabi3177g00023 535 SMART ANK_2a 359 388 IPR002110 GO:0005515
Gabi3177g00023 535 SMART ANK_2a 392 421 IPR002110 GO:0005515
Gabi3177g00023 535 SMART ANK_2a 425 454 IPR002110 GO:0005515
Gabi3177g00023 535 SMART ANK_2a 205 234 IPR002110 GO:0005515
Gabi3177g00023 535 SMART ANK_2a 271 300 IPR002110 GO:0005515
Gabi3177g00023 535 SMART ANK_2a 458 487 IPR002110 GO:0005515
Gabi3177g00023 535 SMART ANK_2a 238 267 IPR002110 GO:0005515
Gabi3177g00023 535 SUPERFAMILY PapD-like 2 150 IPR008962 -
Gabi3177g00023 535 PRINTS Ankyrin repeat signature 441 455 IPR002110 GO:0005515
Gabi3177g00023 535 PRINTS Ankyrin repeat signature 306 321 IPR002110 GO:0005515
Gabi3177g00023 535 SUPERFAMILY Ankyrin repeat 166 490 IPR036770 -
Gabi3177g00023 535 Gene3D - 360 429 IPR036770 -
Gabi3177g00023 535 ProSiteProfiles Ankyrin repeat profile. 238 270 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3177g00023 Gabi-Chr3177 292419 294563 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3177g00023 363 468 Ion Channels AT4G32500 32.075 1.42e-08 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3177g00023 - - qsa:O6P43_006204 837.025