Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3177g00014 ATGTCCAGTCCGACCCGGGTAGATTACCTAGCATTGACAGAAAAAATAAAGGGCCGGTCGCGAACAATTATATTCATTGTTGTGGCCACATTTGTTTCAATGTTCTTCTTCTTGTTTGGCTGGTATGTGCTAAAGAGAAAAGCAAGAAAGAGGCATGAGACTATTCTTAGAGAAAACTTTGGTCATGAAAGTGCCACTCTGGAGCAGTTGCAATTCGATTTGGCTGTGATTGAAGCAGCAACCAACAACTTTTCAGAAGAGAATAAGATTGGCAAAGGTGGATTTGGAGAAGTTTACAAGGGCATTCTTCTTGATGGACGACAAATAGCTGTAAAGAGACTCTCAAGAAGTTCTAAGCAGGGTGTTAATGAGTTCAAGAATGAAGCTTTATTGATAGCGAAGCTTCAACATAGAAATATAGTGGAATTCATTGGCTTTTGTGTTGATGAACGAGAGAAAATGCTTATTTACGAATATGTGCCCAACAACAGCCTTGACTACTTTTTATTTGATTCTCAGAGGAAAAAGTTGTTAAGCTGGCTTGAACGTTATAATATTATACAAGGAATTGCTCGAGGAATTCATTATTTACATGAACATTCTCGACTCAAAGTTATCCATCGTGACCTAAAACCTAGTAATGTTCTATTAGATGGCAATATGATTCCAAAAATCTCTGATTTCGGTTTGGCTAGAATTGTTGAAATAAATGAAGACCATGCAAGTACAAATAAAATTATCGGAACGTATGGTTATATGTCTCCAGAATACGCAATGCTTGGGCAATTTTCAGAGAAATCAGATGTTTTTAGCTTTGGAGTCATGGTTTTAGAGATTATTGCTGGAAAAAAGAATCTAGGTTCATCTGAATCGCTCCATGTTGCTGGTGGTCTCTTGAGTTATGTTTGGAGAGAGTGGAAGCATCAAACACCGCTAAGTATATTGGACCCCAATATTAAGGAAAAAATTTCTGAAATTGAAGTCATTAAGTGCATTCAAATTGGTTTATTAAGTGTTCAACAGGACCCTGATGCTAGACCTGGAATGGCAACAATTGTTTCATATCTTAGCACTGAATTTATTGAATTGCCAACTCCACAAGAACCTGCATTTTTGTTTCACAATAAAATGGGTCCAAAATCATCTGCAGATGAATCATGTTCCAGTCAATCTATCAACGATCCCACACTATTCTCTATCAATGAAATGTCTATAACCGAATTTCTTCCTCGATAG 1236 0.3706 MSSPTRVDYLALTEKIKGRSRTIIFIVVATFVSMFFFLFGWYVLKRKARKRHETILRENFGHESATLEQLQFDLAVIEAATNNFSEENKIGKGGFGEVYKGILLDGRQIAVKRLSRSSKQGVNEFKNEALLIAKLQHRNIVEFIGFCVDEREKMLIYEYVPNNSLDYFLFDSQRKKLLSWLERYNIIQGIARGIHYLHEHSRLKVIHRDLKPSNVLLDGNMIPKISDFGLARIVEINEDHASTNKIIGTYGYMSPEYAMLGQFSEKSDVFSFGVMVLEIIAGKKNLGSSESLHVAGGLLSYVWREWKHQTPLSILDPNIKEKISEIEVIKCIQIGLLSVQQDPDARPGMATIVSYLSTEFIELPTPQEPAFLFHNKMGPKSSADESCSSQSINDPTLFSINEMSITEFLPR 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3177g00014 411 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 45 159 - -
Gabi3177g00014 411 SUPERFAMILY Protein kinase-like (PK-like) 68 381 IPR011009 -
Gabi3177g00014 411 ProSitePatterns Protein kinases ATP-binding region signature. 90 112 IPR017441 GO:0005524
Gabi3177g00014 411 Gene3D Transferase(Phosphotransferase) domain 1 160 362 - -
Gabi3177g00014 411 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 17 407 - -
Gabi3177g00014 411 SMART serkin_6 84 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3177g00014 411 ProSiteProfiles Protein kinase domain profile. 84 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3177g00014 411 FunFam cysteine-rich receptor-like protein kinase 10 160 363 - -
Gabi3177g00014 411 Pfam Protein kinase domain 85 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3177g00014 411 CDD STKc_IRAK 90 356 - -
Gabi3177g00014 411 Gene3D Phosphorylase Kinase; domain 1 44 159 - -
Gabi3177g00014 411 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3177g00014 Gabi-Chr3177 142792 151627 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3177g00014 12 411 Receptor kinase-like Gene Family AT3G45860 49.395 8.63e-131 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi3177g00014 Pkinase 3.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3177g00014 - - aprc:113852296 570.081