Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3177g00013 ATGGTAAAGCTTCCAAAAAGTAACACATCCATGTCTCTCCATAAGATTCCCTTCATCTTTATCCTTGTTACGTTCCTCAGTTTTTCAACTAGTGGGGCACAGGATAGCCCTGTTTATATATACCAAAGTTGCACTACTAACGGAACAACCACCGATAGCGCCTTTCAATTCGAGCTCAGGACACTCCTCTCTTCCTTGTCATCTAACGCCAAGGGTGACACCCAATTCTATAATAACACGGTGACGGTCAATAACTCATCTGAATCAGTCTATGCACTGTTCTTGTGCAGGGGTGACGTCCCCTCTCAGCTTTGTCAACAATGCATCGTGAATGCAAACGAGCGACTATCCTCGGATTGCTCCTTGTCCAAAAAAGCTGTGATTTGGTACGATGAGTGCATGGTTCGGTTTTCCAACCGCTCTTTTTTCTCCACCGTGGACACTAGGCCTAGAGTTGGCCTGTTGAACACCGCCAATGTCTCCAGCCAGGAAAGTTTCATGCGTTTATTGTTTTCCACGATGAATGAAACTGCAGATGAAGCAGCCAATCATCCTATAGGTAAGAAGTATGCCACAAAGAAAGCATCAATCACTGAATTTCAATCTCTTTACTGTCTAGCTCAGTGCACCCCGGACCTGTCACCTCACGATTGCATAACCTGTCTCAGTGGAGTTATAGGAGACCTTCCATGGTGCTGTGAAGGAAAGCAGGGAGGGAGAGTTTTATATCCAAGCTGTAATATTAGGTATGAATTGTACCCTTTTTATCTCACTTCAACAACTGATGCTCCAGCGTTCATTCCTGCAACAAATACTTTCGAAGCAGATTCAAGATTCACAGAACATCCTATTTATCTTTCCCACAATTGCTCGAGTAACAAAACTACCGACAACGATTTCCAAGCAGACCTCAGGATCCTTCTCCGTTACTTATCTTCCAACGCCACCGGTGGCAAGGAGTTTTTCCATAAGACTACTGTGGCGGCCGAGACTGTGTATGGCCTCTTCATGTGCCGAGGTGACATGCCCTTTAGCCTATGTGGACATTGCGTATTAAACGCTTCGAATCGAATATTCTCAGAGTGCCATTTGTTCCAAGAAGCTATAATTTGGTACAGCCAATGCTTGCTTCGCTATTCATCTCGCAATTTCTTCTCCCAAATAGATAAAAGTCCTCAATTTTCTCAATTGAATATCACCAGTGCCTTCAGTCCCATACCAGAGCAAGACTATTTCACTTCAATATTATCAAATATGTTAGCTACACTGGCTAACGAGACGGGGGACAGTGTTCAGAGATTCCTGACAAAATCAGTAAAATTGAATGGCTTACAAACGCTTTATAGTCTTGCTCAATGTACACCGGATTTGTCAAGTGCTGATTGCGGAGGGTGTCTGGGAGATGTGATTGGAACATCAATTCCATGGTCTCGTTTGGGAAGCGTAGGCGGAAGAGTTCTGTATCCTAGCTGCAATCTCAGGTTTGAATTGCTCCAATTTTACATGGGCGGTGACCAAGCTCAGCCACCCACGCCAGGTAGTAGTTCTTCTCAGTCAAGACGCACAGAAAAAATAAAGGGCCGGTCGCGAACAATTATATTCATTGTTGTGGCCACATTTGTTTCAATGTTCTTCTTCTTGTTTGGCTGGTATGTGCTAAAGAGAAAAGCAAGAAAGAGGCATGAGACTATTCTTAGAGAAAACTTTGGTCATGAAAGTGCCACTCTGGAGCAGTTGCAATTCGATTTGGCTGTGATTGAAGCAGCAACCAACAACTTTTCAGAAGAGAATAAGATTGGCAAAGGTGGATTTGGAGAAGTTTACAAGGGCATTCTTCTTGATGGACGACAAATAGCTGTAAAGAGACTCTCAAGAAGTTCTAAGCAGGGTGTTAATGAGTTCAAGAATGAAGCTTTATTGATAGCGAAGCTTCAACATAGAAATATAGTGGAATTCATTGGCTTTTGTGTTGATGAACGAGAGAAAATGCTTATTTACGAATATGTGCCCAACAACAGCCTTGACTACTTTTTATTTGATTCTCAGAGGAAAAAGTTGTTAAGCTGGCTTGAACGTTATAATATTATACAAGGAATTGCTCGAGGAATTCATTATTTACATGAACATTCTCGACTCAAAGTTATCCATCGTGACCTAAAACCTAGTAATGTTCTATTAGATGGCAATATGATTCCAAAAATCTCTGATTTCGGTTTGGCTAGAATTGTTGAAATAAATGAAGACCATGCAAGTACAAATAAAATTATCGGAACGTATGGTTATATGTCTCCAGAATACGCAATGCTTGGGCAATTTTCAGAGAAATCAGATGTTTTTAGCTTTGGAGTCATGGTTTTAGAGATTATTGCTGGAAAAAAGAATCTAGGTTCATCTGAATCGCTCCATGTTGCTGGTGGTCTCTTGAGTTATGTTTGGAGAGAGTGGAAGCATCAAACACCGCTAAGTATATTGGACCCCAATATTAAGGAAAAAATTTCTGAAATTGAAGTCATTAAGTGCATTCAAATTGGTTTATTAAGTGTTCAACAGGACCCTGATGCTAGACCTGGAATGGCAACAATTGTTTCATATCTTAGCACTGAATTTATTGAATTGCCAACTCCACAAGAACCTGCATTTTTGTTTCACAATAAAATGGGTCCAAAATCATCTGCAGATGAATCATGTTCCAGTCAATCTATCAACGATCCCACACTATTCTCTATCAATGAAATGTCTATAACCGAATTTCTTCCTCGATAG 2763 0.4108 MVKLPKSNTSMSLHKIPFIFILVTFLSFSTSGAQDSPVYIYQSCTTNGTTTDSAFQFELRTLLSSLSSNAKGDTQFYNNTVTVNNSSESVYALFLCRGDVPSQLCQQCIVNANERLSSDCSLSKKAVIWYDECMVRFSNRSFFSTVDTRPRVGLLNTANVSSQESFMRLLFSTMNETADEAANHPIGKKYATKKASITEFQSLYCLAQCTPDLSPHDCITCLSGVIGDLPWCCEGKQGGRVLYPSCNIRYELYPFYLTSTTDAPAFIPATNTFEADSRFTEHPIYLSHNCSSNKTTDNDFQADLRILLRYLSSNATGGKEFFHKTTVAAETVYGLFMCRGDMPFSLCGHCVLNASNRIFSECHLFQEAIIWYSQCLLRYSSRNFFSQIDKSPQFSQLNITSAFSPIPEQDYFTSILSNMLATLANETGDSVQRFLTKSVKLNGLQTLYSLAQCTPDLSSADCGGCLGDVIGTSIPWSRLGSVGGRVLYPSCNLRFELLQFYMGGDQAQPPTPGSSSSQSRRTEKIKGRSRTIIFIVVATFVSMFFFLFGWYVLKRKARKRHETILRENFGHESATLEQLQFDLAVIEAATNNFSEENKIGKGGFGEVYKGILLDGRQIAVKRLSRSSKQGVNEFKNEALLIAKLQHRNIVEFIGFCVDEREKMLIYEYVPNNSLDYFLFDSQRKKLLSWLERYNIIQGIARGIHYLHEHSRLKVIHRDLKPSNVLLDGNMIPKISDFGLARIVEINEDHASTNKIIGTYGYMSPEYAMLGQFSEKSDVFSFGVMVLEIIAGKKNLGSSESLHVAGGLLSYVWREWKHQTPLSILDPNIKEKISEIEVIKCIQIGLLSVQQDPDARPGMATIVSYLSTEFIELPTPQEPAFLFHNKMGPKSSADESCSSQSINDPTLFSINEMSITEFLPR 920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3177g00013 920 FunFam Cysteine-rich receptor-like protein kinase 25 392 500 - -
Gabi3177g00013 920 FunFam cysteine-rich receptor-like protein kinase 10 669 872 - -
Gabi3177g00013 920 SUPERFAMILY Protein kinase-like (PK-like) 577 890 IPR011009 -
Gabi3177g00013 920 ProSiteProfiles Protein kinase domain profile. 593 870 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3177g00013 920 SMART serkin_6 593 870 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3177g00013 920 FunFam Cysteine-rich receptor-like protein kinase 25 150 255 - -
Gabi3177g00013 920 ProSitePatterns Protein kinases ATP-binding region signature. 599 621 IPR017441 GO:0005524
Gabi3177g00013 920 ProSitePatterns Serine/Threonine protein kinases active-site signature. 714 726 IPR008271 GO:0004672|GO:0006468
Gabi3177g00013 920 ProSiteProfiles Gnk2-homologous domain profile. 282 384 IPR002902 -
Gabi3177g00013 920 ProSiteProfiles Gnk2-homologous domain profile. 37 142 IPR002902 -
Gabi3177g00013 920 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 37 141 - -
Gabi3177g00013 920 ProSiteProfiles Gnk2-homologous domain profile. 394 500 IPR002902 -
Gabi3177g00013 920 ProSiteProfiles Gnk2-homologous domain profile. 148 255 IPR002902 -
Gabi3177g00013 920 Gene3D Phosphorylase Kinase; domain 1 554 668 - -
Gabi3177g00013 920 CDD STKc_IRAK 599 865 - -
Gabi3177g00013 920 Gene3D Transferase(Phosphotransferase) domain 1 669 871 - -
Gabi3177g00013 920 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 283 383 - -
Gabi3177g00013 920 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 554 668 - -
Gabi3177g00013 920 Pfam Salt stress response/antifungal 44 139 IPR002902 -
Gabi3177g00013 920 Pfam Salt stress response/antifungal 290 381 IPR002902 -
Gabi3177g00013 920 Pfam Salt stress response/antifungal 160 253 IPR002902 -
Gabi3177g00013 920 Pfam Salt stress response/antifungal 409 496 IPR002902 -
Gabi3177g00013 920 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 276 916 - -
Gabi3177g00013 920 Gene3D - 396 500 IPR038408 -
Gabi3177g00013 920 Gene3D - 151 255 IPR038408 -
Gabi3177g00013 920 Gene3D - 36 142 IPR038408 -
Gabi3177g00013 920 Gene3D - 283 384 IPR038408 -
Gabi3177g00013 920 Pfam Protein kinase domain 594 799 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3177g00013 Gabi-Chr3177 141304 151637 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3177g00013 280 920 Receptor kinase-like Gene Family AT4G05200 42.643 6.83e-171 511
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi3177g00013 Pkinase 1.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3177g00013 - - gmx:100798426 1201.42