Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3175g00001 ATGGCTTTGAAGTTTATAGCGATTTCTGCAGTTTCCACGCTTTTAAGCTTTGTGGGTCTGCAGTTTTGCACAGACTTGTCCTTAGATAAACTTAAATCAGATGGACTAATTGGCTGGAATTTAATACATTTGGACAATGCTGACCATGACATTGAGTTACCTCTGGGTTTGTACACAACCACATTTCTACTGGTGAATTGCATGATCAATGTATTTATCCTTCTCAGTCTTTGTCTCAAGGCTGTGTTCTTCACGGAGTTGTATTCTTCGGAAACTCGTAAACTGATTGAGCGTGTCATTAATTATGTCATTTACAAGGGAACATTTCTGCCACTAATTGTGCCGCCAACAATTTATCAGGCAGGTCTTTGGTCAACTTGGTTGACTGTGCTTTGTTCTTTAAAGATGTTTCAAGCTTTGGCTAGAGATCGTTTGGAGCGGCTGAATGCATCTCCGTCTGCTACACCCTGGACATATCTTCGTGTATACTCAGCATTGTTATTCGTTTTCTTGGTTGATGTTCTTTGGATAAGGCTTTGTCTGGCGATATATAGAACACATGCGTCCTCTTTGTTTCTGTTACTATTCTTTGAGCCTTTCAGTATTGCTTTTGAGACCCTACAGGCCATTTTGGTACATGGATTTCAGTTGCTTGACATATGGCTTCATCATTCAGCTTGCAACAGCAGTGATTGCCGAATGCCTAAAGTGCTTGACACATTAACAGCAGGTTCATTATTGGAATGGAAGGGAATTCTTATTCGGAACTTGGGATTTTTCCTAGACATGGCAACATTTTTTATGGCACTTGGCCATTACTTGTATATATGGCGGCTTCATGGCATGGCTTTCCATCTTGTAGATGCAGTGCTATTTCTAAATATACGTGCATTGCTTAGTGCAATAGTCAATCGCATAAAAGGCTTCATCAGGCTAAGAATAGCACTAGGAGCACTTCATGCAGCTCTTCCTGATGCAACAACTGAGGAGCTAAGAGCATATGATGATGAATGTGCTATTTGTAGAGAACCCATGGCTAAGGCGAAAAAGCTAAACTGCAATCACCTCTTCCATCTTGCATGTTTAAGATCTTGGTTGGATCAAGGCCTGACTGAGATGTATACTTGTCCAACATGCCGGAAGCCACTTTTTGCAGGCCGGCCCGAAAATGAAACAAACTCCAGTATGGGGGAAATATCTAGTGATGAGCAACTTGCCCGACAAATAAGTGCAGGATTTGATCGGTCAAACTCTGCTAGACATACCATGCCTGCAGGATTGTATCCAAATCAGCCACCGAACACTGCTGAAGGTGTTCCTTGGAGGGGTGCAGGACTGGACTCGGGTTGGTTGCATTCTTGGCCCAATCAAGGTGTTGATGGAGCTGGTCCATCTACTGCTATCAGAACTGTTGGATTGGGAAGAGTTCAAATGATGATGAGGCATCTTGCAGCTGTTGGAGAAACCTATGCTCAGACCGCCTTTGAAGATGCTGCTTGGAGCCTTTGGCCTATTAATCCTTCTCAGGCTTCTACAAGTGGTGCAAACATTCCTTCCCCTGGTGGAAGATTGCCAGGAGGAACTGGTAGTTTACATATAAGGACTGCATCACATTCTGCAAATGATAATGTGGCAAATATACTTGCTATGGCTGATACTGTTCGGGAGGTTCTACCTCATATTCCAGATGACATAATATTCCAGGACTTGCAGCGGACAAATTCTGTGACAGTTACGGTGAATAATCTTCTCCAAATGTGA 1761 0.4287 MALKFIAISAVSTLLSFVGLQFCTDLSLDKLKSDGLIGWNLIHLDNADHDIELPLGLYTTTFLLVNCMINVFILLSLCLKAVFFTELYSSETRKLIERVINYVIYKGTFLPLIVPPTIYQAGLWSTWLTVLCSLKMFQALARDRLERLNASPSATPWTYLRVYSALLFVFLVDVLWIRLCLAIYRTHASSLFLLLFFEPFSIAFETLQAILVHGFQLLDIWLHHSACNSSDCRMPKVLDTLTAGSLLEWKGILIRNLGFFLDMATFFMALGHYLYIWRLHGMAFHLVDAVLFLNIRALLSAIVNRIKGFIRLRIALGALHAALPDATTEELRAYDDECAICREPMAKAKKLNCNHLFHLACLRSWLDQGLTEMYTCPTCRKPLFAGRPENETNSSMGEISSDEQLARQISAGFDRSNSARHTMPAGLYPNQPPNTAEGVPWRGAGLDSGWLHSWPNQGVDGAGPSTAIRTVGLGRVQMMMRHLAAVGETYAQTAFEDAAWSLWPINPSQASTSGANIPSPGGRLPGGTGSLHIRTASHSANDNVANILAMADTVREVLPHIPDDIIFQDLQRTNSVTVTVNNLLQM 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3175g00001 586 MobiDBLite consensus disorder prediction 420 442 - -
Gabi3175g00001 586 Gene3D - 545 585 - -
Gabi3175g00001 586 ProSiteProfiles Zinc finger RING-type profile. 338 380 IPR001841 -
Gabi3175g00001 586 Pfam CUE domain 550 586 IPR003892 GO:0043130
Gabi3175g00001 586 SUPERFAMILY RING/U-box 325 386 - -
Gabi3175g00001 586 SMART ring_2 338 379 IPR001841 -
Gabi3175g00001 586 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 312 388 IPR013083 -
Gabi3175g00001 586 FunFam E3 ubiquitin protein ligase RIN2 545 585 - -
Gabi3175g00001 586 ProSiteProfiles CUE domain profile. 546 586 IPR003892 GO:0043130
Gabi3175g00001 586 CDD CUE_RIN3_plant 547 584 IPR035667 -
Gabi3175g00001 586 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF8 12 586 - -
Gabi3175g00001 586 FunFam E3 ubiquitin protein ligase RIN2 311 390 - -
Gabi3175g00001 586 CDD RING-H2_AMFR 336 383 - -
Gabi3175g00001 586 Pfam Ring finger domain 336 380 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3175g00001 Gabi-Chr3175 28982 40979 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3175g00001 57 398 C3H Transcription Factor Family AT3G16090 28.134 7.31e-30 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3175g00001 K10636 - gmx:100819656 1055.82