Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3172g00002 ATGGTTTTATTGGATGAACAGGGTGGTAGGATCCACGCCACTGTCAAAGGTTCTTTGCCGGTGCAAAAGAAAATCCATGAAGGAGAGCCAACCAAGTATCAGTATCGTTTGTCTTTCAACTTGAGGACTGATGTTAAATCAATTGTTGATTCTGATATTTCTTCAAGTAAATTTGATTTTGTTGATTATGACATCGTTGAGAAAGAAACGTCAGACTCTCCTTATTTAGTCGACGTCATTGGTTTAATCTCAGGAATTGGGGAAGTTTGTGATCGTGTGGTTTCTGGTAGGAAGACAAAAATGGTAGTGTTGGAGCTTGACAGCCTGAGGGGTCACAAGCTGGAGTGCACTTTGTGGGAGCAATATGCGGATGAGGTGCAGTCTTTTTTGGCAAATAGTGACACTCATCATAACGTCCTGATAGTCCAACTGGGAAGGATAAAATGTTTTAGGGGTAAGGTCGGGATAACAAATACAAAATATACAACAAGGATTGTCATGGATTCGAAGGTGCCAGAGATCGTTGAGTTCAAAAAATGTCTTTCGGCTGATGGTGTGGAAAGCAGTTTGAGGATGACTCAGTTGTCTACTCAGTCCTCCTATTCTTTCGAAAAGGATTTTCTTAGGGAGACTGAAAAGAAGTCTATCAGAGATGTTAAGCTTTGTGGTGAGGTTATGACATGCATCACGTACGGGACTATAAAAGCTATTGAGAGCAAATACAACTGGTGGTACAAGTCTTGCAAAAAATGTCCATTTTTCGTTTGTGAGGATTTTGAAAAATTTAGTGTTCAGGTCAGAGTTGTGGATAACACATATTTCGCGTCATTTCTTCTGTTTGATCGCGACTGTATGTCTTTGTTGGGAATGAGTGTTGGTGAAGTGCGCGAGCTGCATTTCAAGAGGGGTGCAGATTTGGATCAATTTCCAGAAGAGTTAAATGTTCTGAATGAGAAGTCAATGTTGTTCAAGATAAATGTGAAGCAAAAGGATTTGAACTCATACAGTGAGCCCAAATATCAAGTTTCTAAAATTTGTATGAGCGAAGACGTGATCTCAGCGTTCATTAAGTCTCTTATAGATCCAAATGATGAAGCAAATTTCGATAATGCTCGCGAAAATGAAGTTGTATCGTCGGAACCAGAAAAGGCTGCGACTTGTGATAGTGCTGACATTGGTGATATCTCTCTGACGATGTTGACACCTGTGATCAATTCTCATGATTCCATTGCTGGAGAATTTAAATTTTCAGCTGTTCAGACGGCGAAGAGAATAAAGCTTGAAAAAGAGTTACATTTGATGCAGAAGCAGATGAGAATACCCCGTAGATTGGGCTACTGTGACTGA 1347 0.4016 MVLLDEQGGRIHATVKGSLPVQKKIHEGEPTKYQYRLSFNLRTDVKSIVDSDISSSKFDFVDYDIVEKETSDSPYLVDVIGLISGIGEVCDRVVSGRKTKMVVLELDSLRGHKLECTLWEQYADEVQSFLANSDTHHNVLIVQLGRIKCFRGKVGITNTKYTTRIVMDSKVPEIVEFKKCLSADGVESSLRMTQLSTQSSYSFEKDFLRETEKKSIRDVKLCGEVMTCITYGTIKAIESKYNWWYKSCKKCPFFVCEDFEKFSVQVRVVDNTYFASFLLFDRDCMSLLGMSVGEVRELHFKRGADLDQFPEELNVLNEKSMLFKINVKQKDLNSYSEPKYQVSKICMSEDVISAFIKSLIDPNDEANFDNARENEVVSSEPEKAATCDSADIGDISLTMLTPVINSHDSIAGEFKFSAVQTAKRIKLEKELHLMQKQMRIPRRLGYCD 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3172g00002 448 SUPERFAMILY Nucleic acid-binding proteins 214 346 IPR012340 -
Gabi3172g00002 448 SUPERFAMILY Nucleic acid-binding proteins 69 185 IPR012340 -
Gabi3172g00002 448 CDD RPA1_DBD_B_like 78 179 - -
Gabi3172g00002 448 Gene3D - 51 192 IPR012340 -
Gabi3172g00002 448 CDD RPA1_DBD_C 228 361 IPR047192 -
Gabi3172g00002 448 Gene3D - 196 354 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3172g00002 Gabi-Chr3172 13563 16173 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3172g00002 9 334 Core DNA Replication Machinery Family AT5G08020 21.348 1.75e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3172g00002 - - soe:130461853 212.616