Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3169g00004 ATGTTGGGTGCTCCATCTTGTTCCCACTTGCTCCATATGATTGATTGCTTTGTAGCTTTTCTTCTTGTGCTTATCACCCTTTCTTCCCTTCCATCAACAGTTGAACCACTATTCTTCAACATAACAAACTTCAATGATGCTGGAAGCAGCATGTTATATGAAGGTGATGGCATGGCAAGCAACGGATCCATAGACTTAAACAAAGTGAGTTATCTTTTCCGAGTTGGTAGAGCTATATATGGAGAACCCTTGCACCTGTGGGACTCATCTTCTAAAGTTCTCACAGATTTCACCACTAGTTTCACATTCATTATTGACAAGGTGAATGATACCTCATATGGTGATGGCTTTGCCTTTTACTTGGCACCTCTTGGGTACCAGATTCCTCCAAACTCAGCAGGTGGCACTTTTGCACTATTCAATGCCACCACCAATAGCAACTTACCCCAAAACCATGTTTTTGCTGTTGAGTTTGATACCTTCATAGGTTCAACTGACCCACCAATGAAACATGTGGGGATTGATGATAACTCTCTCACATCTGTGGCTTTTGCCATGTTTGATATTGACAACAACATTGGGAACCCTTGTCATGCTTTGATTACTTACACTGCTTCCACCAACACTCTTGCTGTGTCTTGGTACTTCAATGGAAACACAAGCAAAAACACAAGCATAAATTCTTCTCTTTCTTACCAGGTTGACTTCATGAAGATTCTACCAGAGTGGGTGAATGTTGGGTTTTCAGCTTCAACTGGCCTTTCCACAGAACGAAATGTTATACAGTCTTGGAAGTTTAGCTCAACTTTGAACTCCACTGGTGTGAACAGAACAAACAAGAAGTCCAACACAGTTGTGCTAGTTGTTGCTGTGATTTGTCCAGTGATTTTGGTGCTCTTGGTGGCTAGTTTTGCTTATTGGCTAATCCTGAAGAAGAGAAGAAGAACCAACGTTGATGGTGATATTGATGAGTATGGATCCACCTCGGTGATTTTTGATTTGGATAAAGCAACTATACCTAGAAGATTTGATTACCGAGAGTTAGTTGCAGCCACCAATGATTTTGCAGATGATAGAAGGCTAGGAAGAGGAGGGTCAGGACAAGTTTACAAAGGGGTTCTGAGTTATCTAGGAAGAGTTGTTGCTGTGAAAAGGATCTTTGGTGACTTTGAGAATTCAGAGAGAGTGTTCACCAATGAGGTTAGGATCATAAGCCGTCTTATACATAGAAACTTGGTCCAATTCATAGGGTGGTGCCAAGAGCAAGGAGAGTTGTTACTTGTTTTTGAGTACATGCCTAATGGAAGCCTTGACACACATCTCTTTGGGAACAAGAAAACTTTAGTATGGGATGTGAGGTACAAGGTAGCATTAGGAGTGGCCACAGCACTTCGTTATCTTCATGAGGATGCAGAGCAGTGTGTTCTTCATAGAGATATTAAGTCAGCTAATGTGTTATTGGACACAGATTTCAGCACCAAGCTTGGAGATTTTGGGATGGCAAAGTTGGTGGATCCAAGGTTGAGGACTCAGAGGACAGGGGTAGTTGGGACATATGGGTATCTGGCACCAGAATACATCAATGGAGGGAGGGCTAGTAAAGAATCAGACATGTATAGTTTTGGTGTTGTGGCTCTCGAGCTTGCAAGTGGAAGGAGGACTTATCAAGATGGAGAGTTTCATGTGCCTCTGATGAATTGGGCATGGCAACTCTATGTGGAAGGGAATATTCTTGATGCTGCTGATGATGGATTGGATAAAGTGTTTGATGTGAATGAAATGACAAGCTTGCTCATTGTGGGGCTATGGTGTACCAATCCAAATGAGAAGGAAAGGCCTAAGGCAGCACAGGTAATAAGGGTTCTTCAGCTTGAAGCTCCATTACCTGTGCTTCCACTTGATATGCATGATCGTCCTTCTCTTCCAATGATTAGGCAATCCATTTCTTCCTTACAAACACCACCCATCACTAACAGCTTTATTAGTGTTGGACGTTAA 1998 0.4224 MLGAPSCSHLLHMIDCFVAFLLVLITLSSLPSTVEPLFFNITNFNDAGSSMLYEGDGMASNGSIDLNKVSYLFRVGRAIYGEPLHLWDSSSKVLTDFTTSFTFIIDKVNDTSYGDGFAFYLAPLGYQIPPNSAGGTFALFNATTNSNLPQNHVFAVEFDTFIGSTDPPMKHVGIDDNSLTSVAFAMFDIDNNIGNPCHALITYTASTNTLAVSWYFNGNTSKNTSINSSLSYQVDFMKILPEWVNVGFSASTGLSTERNVIQSWKFSSTLNSTGVNRTNKKSNTVVLVVAVICPVILVLLVASFAYWLILKKRRRTNVDGDIDEYGSTSVIFDLDKATIPRRFDYRELVAATNDFADDRRLGRGGSGQVYKGVLSYLGRVVAVKRIFGDFENSERVFTNEVRIISRLIHRNLVQFIGWCQEQGELLLVFEYMPNGSLDTHLFGNKKTLVWDVRYKVALGVATALRYLHEDAEQCVLHRDIKSANVLLDTDFSTKLGDFGMAKLVDPRLRTQRTGVVGTYGYLAPEYINGGRASKESDMYSFGVVALELASGRRTYQDGEFHVPLMNWAWQLYVEGNILDAADDGLDKVFDVNEMTSLLIVGLWCTNPNEKERPKAAQVIRVLQLEAPLPVLPLDMHDRPSLPMIRQSISSLQTPPITNSFISVGR 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3169g00004 665 ProSitePatterns Protein kinases ATP-binding region signature. 361 384 IPR017441 GO:0005524
Gabi3169g00004 665 FunFam L-type lectin-domain containing receptor kinase IX.1 340 431 - -
Gabi3169g00004 665 Gene3D Phosphorylase Kinase; domain 1 332 431 - -
Gabi3169g00004 665 FunFam L-type lectin-domain containing receptor kinase IX.1 432 632 - -
Gabi3169g00004 665 PANTHER - 61 626 - -
Gabi3169g00004 665 SMART serkin_6 355 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3169g00004 665 Pfam Protein kinase domain 356 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3169g00004 665 ProSiteProfiles Protein kinase domain profile. 355 631 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3169g00004 665 ProSitePatterns Serine/Threonine protein kinases active-site signature. 475 487 IPR008271 GO:0004672|GO:0006468
Gabi3169g00004 665 SUPERFAMILY Protein kinase-like (PK-like) 339 645 IPR011009 -
Gabi3169g00004 665 SUPERFAMILY Concanavalin A-like lectins/glucanases 37 270 IPR013320 -
Gabi3169g00004 665 CDD lectin_legume_LecRK_Arcelin_ConA 39 270 IPR001220 GO:0030246
Gabi3169g00004 665 Gene3D Transferase(Phosphotransferase) domain 1 432 627 - -
Gabi3169g00004 665 ProSitePatterns Legume lectins alpha-chain signature. 240 249 IPR000985 -
Gabi3169g00004 665 Gene3D - 35 285 - -
Gabi3169g00004 665 Pfam Legume lectin domain 39 273 IPR001220 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3169g00004 Gabi-Chr3169 36966 38963 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3169g00004 19 635 Receptor kinase-like Gene Family AT5G10530 43.860 1.42e-175 513
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Gabi3169g00004 Pkinase 1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3169g00004 - - vun:114193012 931.784