Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3169g00001 ATGGATGCTTCTTTCTCAATAGAGACTCTGGTTTTGAATGCTCAACGTGAGGGGATGCTTATGGACGGCGGCGTTTTGGTCTTAGATTCATTCAACCACACCATACAAAGAAGCAATAGACGATCTCGTGCGGAATTGGGTTACAACCAAAACATTCAAAGAAGCAATAGACGATCTCGTCGTGACTTGGGTTACAACCAAAACATGCAAAGAAGCAATATCCGATCTCGTGCTGAGTTGTTTTACAACCAAAACATGCAAAGAAGCAATAGACGATCTCGTCGTGAGTTGGGTTACAACCACAACATGCAAAGAAACAATATCCGATCTCGTGCTGAGTTGTTTTACAACCAAAACATGCAAAGCAGCAATAGACGATCTCGTGGTGAGTTAGGTTACAACCACACTATGCAAAGAAGCAATATCCGATCTCGTGCTGAATTGGGTTACAACCAAAACATGCAAAACAGCAATATCCGATCTCGTCTGGAATTGGGTTACAACCTCAGCATGCTAAACAACGGTAGATATTCTGTTTACCACTTGGATTCGCTGGACTTGGTTTACAACCACAACATGCAGAACAATGTAATAACAGATCAAAGGGGTTATGTCTTTGGTGGTTCTGTAGACTTGGATGGTGGAGTTTCAAGGGTGGATCAGTCCACAACACAAGAATCTTTTCAAAATCTTGAAGAAGTCACGATTGAAGCAGAGTCCTCTTCCATCACAGAAGATTGTTCTATTTGTCTCGGGGAGATTGGGTCAAGAGCAATTGGCTTGCCTTGCTCACACTTGTTTCATCGGGATTGCATCACTAAGTGGCTCACGATTCGCAATACATGTCCTTTATGTAGATGTAGTGTCTTGTCTATGAATTAA 882 0.4218 MDASFSIETLVLNAQREGMLMDGGVLVLDSFNHTIQRSNRRSRAELGYNQNIQRSNRRSRRDLGYNQNMQRSNIRSRAELFYNQNMQRSNRRSRRELGYNHNMQRNNIRSRAELFYNQNMQSSNRRSRGELGYNHTMQRSNIRSRAELGYNQNMQNSNIRSRLELGYNLSMLNNGRYSVYHLDSLDLVYNHNMQNNVITDQRGYVFGGSVDLDGGVSRVDQSTTQESFQNLEEVTIEAESSSITEDCSICLGEIGSRAIGLPCSHLFHRDCITKWLTIRNTCPLCRCSVLSMN 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3169g00001 293 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 214 291 IPR013083 -
Gabi3169g00001 293 Pfam Ring finger domain 246 286 IPR001841 -
Gabi3169g00001 293 SMART ring_2 247 285 IPR001841 -
Gabi3169g00001 293 CDD RING-H2_PA-TM-RING 246 286 - -
Gabi3169g00001 293 SMART ringv_2 246 286 IPR011016 GO:0008270
Gabi3169g00001 293 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 98 287 - -
Gabi3169g00001 293 MobiDBLite consensus disorder prediction 43 65 - -
Gabi3169g00001 293 SUPERFAMILY RING/U-box 246 290 - -
Gabi3169g00001 293 ProSiteProfiles Zinc finger RING-type profile. 247 286 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3169g00001 Gabi-Chr3169 5798 6679 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3169g00001 107 289 C3H Transcription Factor Family AT1G04790 28.061 3.14e-12 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3169g00001 - K22378 tpra:123917723 77.7962