Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3164g00002 ATGTATTCCAAGTATGATTTTATTAAGGATCTTAATCCTACTAAGGAGGAGTGGAGGATTAAGGCTAGAGTTGTTAGAACATGGAAGGTTCCTAATTTTCAGCAAAAAAAATTTGACGATAACGTAGAGATGATTCTGTTAGATGAAAAGGGTGGAAAGGTCCACGCTGCTGTCAAGGGTTCTTTGCATATCCGTAAAAAAATTCACGAAGGAGAAGTTTATTGCATAAAAATTTTTGGAGTTGGTTTGAATAGTGGTAGTTTCAGGCCAACTAAGCATGATTATCCTTTGTCTTTCAACTTAAGGACTGATGTAAAATCCACTATTGAGTCTGCTATTCCCACCAATGGATTTGATTTTGTAGATTTTGACGTTATAGAGAAAGAGTCTTCTGATTCCCCTTATTTAGTAGATGTCATCGGTTTAGTCTCTGGAATAGGGGAAGTTCGTGAGCACATTATCTCCGGTAGGAAGACAAAAATGGTTGTCGTGGAGCATGATAACCTCAGGGGTCACAAGCTCGAGTGCACTCTCTGGGAGGACTACGTGGACCAGGTGCAACAATTTTTGGGGAGTAATCAGTCTCCTCAAAACGTGATGATAGTTCAGCTTGCTAGAATAAAGGGTTTCAGGGGAAAAATTGGAATAACAAATACAAAGTATACGACGAGGATAATTATCGATCCCAGTGTACCAGAGATTGTCGACTTCAAAAAAAGGCTTTCGTCTGATGTCATTGATAGCGGTTACACGCTGTCTCAGTTATCAAGTCAGTCCTCATATTCTTTTGAGAATGATTTCCTGAAAGAGACGGAAAGAAAGTGTATCAGTGATGTTAAGAATTGTAGTGAGTTGAGAGTTGTGGATCACACTGATTCTGCATCTTTCATTCTGTTTGATAGAGATTGTGTCGCTTTGTTGGGCATGAGTGCTGCGGATTTACGTGAGCAGCATTTCAAAAGGGGTGCTGATTTGGAGCACTATCCTAAGGAACTTAATGTTCTTATTGATAAATCCATGTTGTTTAAAGTGAATGTGAAAAAAAATAATTTGGACTCATACAGTGAGCCTAAGTAA 1077 0.3881 MYSKYDFIKDLNPTKEEWRIKARVVRTWKVPNFQQKKFDDNVEMILLDEKGGKVHAAVKGSLHIRKKIHEGEVYCIKIFGVGLNSGSFRPTKHDYPLSFNLRTDVKSTIESAIPTNGFDFVDFDVIEKESSDSPYLVDVIGLVSGIGEVREHIISGRKTKMVVVEHDNLRGHKLECTLWEDYVDQVQQFLGSNQSPQNVMIVQLARIKGFRGKIGITNTKYTTRIIIDPSVPEIVDFKKRLSSDVIDSGYTLSQLSSQSSYSFENDFLKETERKCISDVKNCSELRVVDHTDSASFILFDRDCVALLGMSAADLREQHFKRGADLEHYPKELNVLIDKSMLFKVNVKKNNLDSYSEPK 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3164g00002 358 Gene3D - 261 358 IPR012340 -
Gabi3164g00002 358 PANTHER OS03G0429900 PROTEIN 7 239 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Gabi3164g00002 358 Gene3D - 112 246 IPR012340 -
Gabi3164g00002 358 CDD RPA1_DBD_B_like 138 241 - -
Gabi3164g00002 358 Pfam Domain of unknown function DUF223 43 133 IPR003871 -
Gabi3164g00002 358 SUPERFAMILY Nucleic acid-binding proteins 285 357 IPR012340 -
Gabi3164g00002 358 SUPERFAMILY Nucleic acid-binding proteins 5 107 IPR012340 -
Gabi3164g00002 358 Gene3D - 7 110 IPR012340 -
Gabi3164g00002 358 CDD RPA1_DBD_A_like 19 105 - -
Gabi3164g00002 358 SUPERFAMILY Nucleic acid-binding proteins 118 244 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3164g00002 Gabi-Chr3164 27603 29449 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3164g00002 8 238 Core DNA Replication Machinery Family AT4G19130 26.613 2.01e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3164g00002 - - vun:114187234 213.772