Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3164g00001 AAGGAATCTATGGAACTTATTGAGGATGAACAGCTGGAATTGATGGAGTTGGCTGCCTCAAGCAAGGGGTTTTCCTCTATTATACGTCTTGATTTTGATACTTTGCAAAACCTTGAATCATATAAGGATTCGTTGTGTGTTTTCCCACCCAAGAGTGTAAAGCTAAGAAAACCATTTGCTATCCAACCCTGGATCAACTCTGAAGAGAATGTTGGTAACCTGCTCATGGTTTGGAGATTTTTGATTACTTTTGCTGATGTTCTGGAGTTATGGCCTTTTACTCTCGATGAGTTTATGCAAGCATTTCACGACTATGATTCAAGACTGTTGGGTGAGATACATGTTGCTCTTCTTAAAGTGATAATAAAAGACATTGAGGATGTTGCAAGGACACCTTCTACAGGATTAGGAATGAATCAGAATGGTGCTGTTAATTCTGGAGGTGGCCATCCAGAGATTGTGGAAGGGGCATATGCATGGGGGTTTGACATACGAAATTGGCATAAGCACTTAAATCAGTTGACATGGCCGGAAATCTTCCGACAGCTAGCATTATCTGCAGGATATGGACCACAGTTGAAGAAAAGAAGTGTTACATGGTCCTATGAAAAAGATAAAGACGAGGGCAGAAGTTGCGAAGATATCATTTCTACACTTCGTAATGGTTCAGCAGCCGAAAATGCAGTTGCAAAAATGCAGGAGAAAGGGCTATTAGCACCTCGAAGATCTAGGCATAGGTTAACTCCTGGAACAGTTAAGTTTGCAGCATTTCATGTTCTCTCGCTTGAGGGTAGCAAGGGATTGACAGTACTAGAGCTCGCAGAAAAAATTCAGAAATCTGGTCTTCGGGACCTGACAACCAGCAAGACACCTGAGGCATCCATTTCTGTTGCTTTGACAAGAGATGCCAAGCTTTTTGAAAGAATAGCTCCATCAACGTATCGTGTTCGTTCTGCATTTAGAAAAGATCCTGCTGATGCTGAGTCCATTCTGTCTGAAGCAAGAAAGAAAATTCAGATATTTGAAAATGGGTTTCAAGCTGGGGAAGATGCTGATGATGTTGCAAGAGAAGAAGAGTCTGAAAGTGACGAAGTTGATGAGGATCGTGAAGTTGATGACTTGGTAAATCCTTCAATTGCTAAAAAAACATCTGAACTGTGTGATGATTTATCATCAAATGGAAAAGAAAATTTGGTTAATGATGTAGAACTTCAAGATGAGTTTGATAAGGATATGCCTTGTTTTCCTGAGAATGGTTCAAAGAATACCGATTGTGCAAGTACTGCCACTGGACAACCTGTTGCTTGTGAAGATCTGAATGCTGGAAATCTTGGTGAAGATAATACGGAAATTGATGAAAGCAAGTCTGGAGAATCATGGGTTAAAGGGCTTGCAGAAGGAGAATATTCTGATCTCAGTGTAGAGGAGCGTCTAAATGCTCTTGTTGTGTTGGTTGGTGTGGCAAACGAAGGAAATTCAATCCGTGTTGTTCTTGAGGATCGTTTGGAAGCATCAAATGCACTGAAGAAGCAAATGTGGGCAGAAGAAGCACAGACAGACAAAGTTCGTCTGAAAGATGATATTTTTAATAAATTAGATTTTGCATCTATGGGTGGCAATAAAGTTGAAACACAAGACACATGTCCTATTGTGGAGGGCCACCGAAGTCCATTGCTTGACATTAATATTGACGCTGATAATAATGAGGCATCACCCAGCACTGCAGAAAATCAAAAAGCAGCTCCTGTTGCACAGAGCCTGTCTGTTGAAAGGCCCTCTTCAGTTCAAGATCTCTGTACAGGTCCAGATAACCCTCAGGCTCAGCTATCTGCACAATATTCAAAAAGGTCACGATCCCAGTTGAAATCTTATATTTCCCACATAGCGGAGGAGACGTTTGTCTACAGATCCTTACCCCTTGGCCAAGATCGCCGACGTAATCGATATTGGCAATTTGTTGCATCTGCTTCTTGCAATGATCCTGGCTCTGGCAGGATCTTTGTTGAATATCATGATGGAAATTGGAGGCTTATTGATTCTGAAGAGGCCTTCAATGCACTTTTGAATTCACTGGATTCACGTGGGATGAGGGAATCTCATTTGCGTTTGATGTTGCTGAAGATTGAAAATCCGTTTAAGGAAAATGTTCGAAAGAACACACTTAGCAACAAAATTGGAAGCAGAGATGAAGCTGATGAAACTGATTCCAGTCCTGATCTCCAGACTGGAACTGACACTCCTAGCAGTACTCTTTGTGGCTTGAACTCTGATGTTTCAGAAACTTCATCATCCTTCAAAATTGAGCTCGGGAAAAGTGAGAGCGAGAAGAAAGCTGCCTTGAGAAGGTATCAAGATTTCCAAAAATGGATGTGGAAAGAATGCTACTGCTCATCAATATTATGTGCAATGAAACATGGGAGAAAGAGAGGCAGCCCTCAGGTTGACATCTGTGATATCTGTCTCAACCCTTATTTCTTTGAAGACTCTCATTGCAATTGTTGCCACCGCACTTTTCCCTCAAATAATGGATTTAATTTTTCTAAACATGCATTTCAATGTGGAGACAAGTTATCCAAAGATATTAGTAATTTAGATTCTTCTCTTCCCTTGCGGACAAGATTGTTTAAGGCTCTTCTTGCTTTTATTGAGGCATTTGTTCCACCTGAAGCATTTCAATCAATTTGGAAAGAAGATATTAGGAGGCATTGGGGTCTGAAGTTAAGCAAATCATCTTCTGCTGATGAACTTCTACAGATATTGACCCTACTTGAGAGAGCATTAAAGCGAGATTTTTTATCATCAACCTTCACTACAACAGAGGAACTGTTGCGGTCGAGCAGTATGTCAGAGAGTGCTGCACATACTTCTACTAATCCTGAATCAGTTGCTACACTTCCATGGGTTCCACAGACTACTGCAGCTGTGTTTCTTAGACTTTTTGAGTTGGATGGATCCATAATCTATGTACCGCGTGAGAAAACTGAGCTTCGTGAGGAGAAAGACTCTAGGGAGTGCATAAAGCTTCCTTCAAGATATAATCCCTCCAAATCTAGTAAAGTGGTTGAACCAGAACCAGCAGATTCGGACCATGATGATTTCATGAAAGTTAAATCTGCTCCTATGAAAATTGCACGGAGCAGCAATAAACGTGGACGAGGGAGTCATGATAAAGGACGGGGTAAAAAGCTATCTAAAAGAATGAGGGATTCTAAACGAGATACCAGCCGCAATGTTAAGGTCACTGAGAATCTAAGTCAGAGAATTAAACAGCAGGGACGAGGATCACAAGGACAAGCTGGTGGACGTGGTCGCCGGACAGTGAGGAAAAGGAGAGTGGAAAAAAGGGCTGTTGAAGATTTGTTGCTGGGCCATGGGGCTGCCTCTCATAGCTCCAGTATCGGTAGGGAACCATTGAGAAGCTTGGATGAGGATTGGGATGATAGAAAGGCAAGTCCCATGACTCCCATCCACATGGGGGCTGCCGACATCAGTAACAGTGCTGAAGAGGCTGAATCTGGTGATAATGCTCAAGCAGTGGAATCTGATGATAATGCTCAAGCAGTGGAATCTGATGACAATGATGAAGCAGTGGAATCTGATGACAATGATGAAGCAGTGGAATATGATCAAGGAAACTGGGAGATTGGTTTTAGCGGTACCCCCAACAGATGGAGTAGGCATTTGGTTAATATGAGTGATGAAGATGTGGAAGCTTCTGAAGATGACAATGACAATGGCATTGAAGAGGAGGATTCAGAGGCAGATGTTATGAGCGAGGGTTCAGATGGTATGGCTAATGGAGTTGTAAATGGAGCAGGCTCAGACTCGGCTGATTCTGAAGATTCTTCTGATTAG 3855 0.42 KESMELIEDEQLELMELAASSKGFSSIIRLDFDTLQNLESYKDSLCVFPPKSVKLRKPFAIQPWINSEENVGNLLMVWRFLITFADVLELWPFTLDEFMQAFHDYDSRLLGEIHVALLKVIIKDIEDVARTPSTGLGMNQNGAVNSGGGHPEIVEGAYAWGFDIRNWHKHLNQLTWPEIFRQLALSAGYGPQLKKRSVTWSYEKDKDEGRSCEDIISTLRNGSAAENAVAKMQEKGLLAPRRSRHRLTPGTVKFAAFHVLSLEGSKGLTVLELAEKIQKSGLRDLTTSKTPEASISVALTRDAKLFERIAPSTYRVRSAFRKDPADAESILSEARKKIQIFENGFQAGEDADDVAREEESESDEVDEDREVDDLVNPSIAKKTSELCDDLSSNGKENLVNDVELQDEFDKDMPCFPENGSKNTDCASTATGQPVACEDLNAGNLGEDNTEIDESKSGESWVKGLAEGEYSDLSVEERLNALVVLVGVANEGNSIRVVLEDRLEASNALKKQMWAEEAQTDKVRLKDDIFNKLDFASMGGNKVETQDTCPIVEGHRSPLLDINIDADNNEASPSTAENQKAAPVAQSLSVERPSSVQDLCTGPDNPQAQLSAQYSKRSRSQLKSYISHIAEETFVYRSLPLGQDRRRNRYWQFVASASCNDPGSGRIFVEYHDGNWRLIDSEEAFNALLNSLDSRGMRESHLRLMLLKIENPFKENVRKNTLSNKIGSRDEADETDSSPDLQTGTDTPSSTLCGLNSDVSETSSSFKIELGKSESEKKAALRRYQDFQKWMWKECYCSSILCAMKHGRKRGSPQVDICDICLNPYFFEDSHCNCCHRTFPSNNGFNFSKHAFQCGDKLSKDISNLDSSLPLRTRLFKALLAFIEAFVPPEAFQSIWKEDIRRHWGLKLSKSSSADELLQILTLLERALKRDFLSSTFTTTEELLRSSSMSESAAHTSTNPESVATLPWVPQTTAAVFLRLFELDGSIIYVPREKTELREEKDSRECIKLPSRYNPSKSSKVVEPEPADSDHDDFMKVKSAPMKIARSSNKRGRGSHDKGRGKKLSKRMRDSKRDTSRNVKVTENLSQRIKQQGRGSQGQAGGRGRRTVRKRRVEKRAVEDLLLGHGAASHSSSIGREPLRSLDEDWDDRKASPMTPIHMGAADISNSAEEAESGDNAQAVESDDNAQAVESDDNDEAVESDDNDEAVEYDQGNWEIGFSGTPNRWSRHLVNMSDEDVEASEDDNDNGIEEEDSEADVMSEGSDGMANGVVNGAGSDSADSEDSSD 1284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3164g00001 1284 MobiDBLite consensus disorder prediction 1022 1038 - -
Gabi3164g00001 1284 SMART testlast3 68 127 IPR018501 -
Gabi3164g00001 1284 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 1 1284 IPR044977 GO:0006357
Gabi3164g00001 1284 Pfam DDT domain 69 124 IPR018501 -
Gabi3164g00001 1284 MobiDBLite consensus disorder prediction 1052 1066 - -
Gabi3164g00001 1284 MobiDBLite consensus disorder prediction 1168 1184 - -
Gabi3164g00001 1284 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 456 499 IPR028942 -
Gabi3164g00001 1284 MobiDBLite consensus disorder prediction 347 370 - -
Gabi3164g00001 1284 MobiDBLite consensus disorder prediction 566 584 - -
Gabi3164g00001 1284 MobiDBLite consensus disorder prediction 1079 1097 - -
Gabi3164g00001 1284 MobiDBLite consensus disorder prediction 737 757 - -
Gabi3164g00001 1284 MobiDBLite consensus disorder prediction 564 584 - -
Gabi3164g00001 1284 MobiDBLite consensus disorder prediction 1235 1257 - -
Gabi3164g00001 1284 ProSiteProfiles DDT domain profile. 68 127 IPR018501 -
Gabi3164g00001 1284 MobiDBLite consensus disorder prediction 998 1284 - -
Gabi3164g00001 1284 MobiDBLite consensus disorder prediction 352 370 - -
Gabi3164g00001 1284 ProSiteProfiles HARE-type HTH domain profile. 250 319 IPR007759 GO:0006355
Gabi3164g00001 1284 MobiDBLite consensus disorder prediction 1136 1151 - -
Gabi3164g00001 1284 MobiDBLite consensus disorder prediction 1185 1208 - -
Gabi3164g00001 1284 MobiDBLite consensus disorder prediction 719 757 - -
Gabi3164g00001 1284 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 636 708 IPR028941 -
Gabi3164g00001 1284 Pfam HB1, ASXL, restriction endonuclease HTH domain 250 318 IPR007759 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3164g00001 Gabi-Chr3164 6 6709 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3164g00001 1 1110 Homeobox Transcription Factor Family AT1G28420 52.547 0.0 1026
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Gabi3164g00001 WSD 2.7e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3164g00001 - - gmx:100818817 1892.47