Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3163g00002 ATGGAAGGTCGCCGGAGGGTAACACTTCATGATCAAATGTCAGCATCAGACACGCTAGCCGGATTGAGCCTTGACGACATCTTAGGCAACCAGAAAAGACCACACGCAGCGCCGCCGCCGCCGCAGCAACAGCTCCCAAAGAGCCGAACCCTCCTAGACATCATCAGAGAAGACGAGACCAACAAGAAGGACCGCAGATCTTGGAAAGCCTTCAAGGACAAGCTTCGGCTCAAGCGCGCCGGCTCTGCTTGGACATCGTCAATTCATATTCCGACTTCGGATATCCCAGTCCCTCACCCAAACAGCAGAAGCTTTTCCCAGTACGGTCGTCGAAACTCGGTCCGCCACCAGACTCACCCCGACTCGGACACGTCAACTCAGTACATGGCTCACCAAGTGGAAGACCTCGACCCGACGGAGGACTCCGATTCACCGGCAACGGCGCCAGCCACAAGGCCTCAGTTCACTCGCGGTAGCTCTACACGTTACAGGTCACCGCTCGACACGCCTTTCGCCGGCGACTCCTCCGACAACGTCCCCGCCGGCGGCGTTCTCCGGCCGCAGCTATCTCGGCGGAACTCCACCACCCTGCAAACGGAGCCGTTCCGGCGAGGCCGCGTGGTGACTTTCCGGGACAGCTTCGACGACGACGAACCCGACGACGGCAGCAGGCTCCCGGAGACAGGGAGGGCGCTGTCGGCAAGGGAGGCGGTGGCGGCGCAGGAGGCAGCGGAAGCTGCGGCGGCAGCAGAGGCGGAGGAGGCGGGTGAGGCTCCGGTGATGATGTCGCTGATGGATTTGCTGGAGGAAACTGATAGGGAAATGGGGCTTGAAGGGTCAAGGTATATATTGAGTGATGACGAAGATTTTGATGAAGAAGAAGGTGGGGAAGCTGAAGAGGAAGGAGAAGGTGTAATGGAATACACATGCTGTGTTTGCATGGTGAGGCATAAGGCTGCTGCTTTTATACCTTGTGGCCACACTTTCTGCAGGATGTGTTCAAGGGAGCTTATGGTCAGTAGGGGCAATTGCCCACTCTGCAACAATTTCATTTTGGAGATTCTTGACATTTTCTGA 1077 0.5738 MEGRRRVTLHDQMSASDTLAGLSLDDILGNQKRPHAAPPPPQQQLPKSRTLLDIIREDETNKKDRRSWKAFKDKLRLKRAGSAWTSSIHIPTSDIPVPHPNSRSFSQYGRRNSVRHQTHPDSDTSTQYMAHQVEDLDPTEDSDSPATAPATRPQFTRGSSTRYRSPLDTPFAGDSSDNVPAGGVLRPQLSRRNSTTLQTEPFRRGRVVTFRDSFDDDEPDDGSRLPETGRALSAREAVAAQEAAEAAAAAEAEEAGEAPVMMSLMDLLEETDREMGLEGSRYILSDDEDFDEEEGGEAEEEGEGVMEYTCCVCMVRHKAAAFIPCGHTFCRMCSRELMVSRGNCPLCNNFILEILDIF 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3163g00002 358 PANTHER OS01G0917900 PROTEIN 4 358 - -
Gabi3163g00002 358 MobiDBLite consensus disorder prediction 88 197 - -
Gabi3163g00002 358 SMART ring_2 310 347 IPR001841 -
Gabi3163g00002 358 MobiDBLite consensus disorder prediction 88 132 - -
Gabi3163g00002 358 MobiDBLite consensus disorder prediction 144 166 - -
Gabi3163g00002 358 Pfam Zinc finger, C3HC4 type (RING finger) 308 351 - -
Gabi3163g00002 358 MobiDBLite consensus disorder prediction 1 50 - -
Gabi3163g00002 358 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 285 358 IPR013083 -
Gabi3163g00002 358 CDD RING-HC 308 347 - -
Gabi3163g00002 358 ProSiteProfiles Zinc finger RING-type profile. 310 348 IPR001841 -
Gabi3163g00002 358 SUPERFAMILY RING/U-box 309 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3163g00002 Gabi-Chr3163 19732 25533 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3163g00002 14 358 C3H Transcription Factor Family AT3G07120 36.968 3.27e-60 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3163g00002 - - gmx:100795449 450.669