Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3163g00001 ATGTCAGCATCAGACACGCTAGCCGGATTGAGCCTTGACGACATCTTAGGCAACCAGAAAAGACCACACGCAGCGCCGCCGCCGCCGCAGCAACAGCTCCCAAAGAGCCGAACCCTCCTAGACATCATCAGAGAAGACGAGACCAACAAGAAGGACCGCAGATCTTGGAAAGCCTTCAAGGACAAGCTTCGGCTCAAGCGCGCCGGCTCTGCTTGGACATCGTCAATTCATATTCCGACTTCGGATATCCCAGTCCCTCACCCAAACAGCAGAAGCTTTTCCCAGTACGGTCGTCGAAACTCGGTCCGCCACCAGACTCACCCCGACTCGGACACGTCAACTCAGTACATGGCTCACCAAGTGGAAGACCTCGACCCGACGGAGGACTCCGATTCACCGGCAACGGCGCCAGCCACAAGGCCTCAGTTCACTCGCGGTAGCTCTACACGTTACAGGTCACCGCTCGACACGCCTTTCGCCGGCGACTCCTCCGACAACGTCCCCGCCGGCGGCGTTCTCCGGCCGCAGCTATCTCGGCGGAACTCCACCACCCTGCAAACGGAGCCGTTCCGGCGAGGCCGCGTGGTGACTTTCCGGGACAGCTTCGACGACGACGAACCCGACGACGGCAGCAGGCTCCCGGAGACAGGGAGGGCGCTGTCGGCAAGGGAGGCGGTGGCGGCGCAGGAGGCAGCGGAAGCTGCGGCGGCAGCAGAGGCGGAGGAGGCGGGTGAGGCTCCGGTGATGATGTCGCTGATGGATTTGCTGGAGGAAACTGATAGGGAAATGGGGCTTGAAGGGTCAAGGTATATATTGAGTGATGACGAAGATTTTGATGAAGAAGAAGGTGGGGAAGCTGAAGAGGAAGGAGAAGGTGTAATGGAATACACATGCTGTGTTTGCATGGTGAGGCATAAGGCTGCTGCTTTTATACCTTGTGGCCACACTTTCTGCAGGATGTGTTCAAGGGAGCTTATGGTCAGTAGGGGCAATTGCCCACTCTGCAACAATTTCATTTTGGAGATTCTTGACATTTTCTGA 1041 0.5764 MSASDTLAGLSLDDILGNQKRPHAAPPPPQQQLPKSRTLLDIIREDETNKKDRRSWKAFKDKLRLKRAGSAWTSSIHIPTSDIPVPHPNSRSFSQYGRRNSVRHQTHPDSDTSTQYMAHQVEDLDPTEDSDSPATAPATRPQFTRGSSTRYRSPLDTPFAGDSSDNVPAGGVLRPQLSRRNSTTLQTEPFRRGRVVTFRDSFDDDEPDDGSRLPETGRALSAREAVAAQEAAEAAAAAEAEEAGEAPVMMSLMDLLEETDREMGLEGSRYILSDDEDFDEEEGGEAEEEGEGVMEYTCCVCMVRHKAAAFIPCGHTFCRMCSRELMVSRGNCPLCNNFILEILDIF 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3163g00001 346 MobiDBLite consensus disorder prediction 76 185 - -
Gabi3163g00001 346 SMART ring_2 298 335 IPR001841 -
Gabi3163g00001 346 Pfam Zinc finger, C3HC4 type (RING finger) 296 339 - -
Gabi3163g00001 346 SUPERFAMILY RING/U-box 297 342 - -
Gabi3163g00001 346 PANTHER OS01G0917900 PROTEIN 2 346 - -
Gabi3163g00001 346 MobiDBLite consensus disorder prediction 1 38 - -
Gabi3163g00001 346 MobiDBLite consensus disorder prediction 76 120 - -
Gabi3163g00001 346 ProSiteProfiles Zinc finger RING-type profile. 298 336 IPR001841 -
Gabi3163g00001 346 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 273 346 IPR013083 -
Gabi3163g00001 346 MobiDBLite consensus disorder prediction 132 154 - -
Gabi3163g00001 346 CDD RING-HC 296 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3163g00001 Gabi-Chr3163 19475 25533 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3163g00001 2 346 C3H Transcription Factor Family AT3G07120 36.968 2.50e-60 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3163g00001 - - gmx:100795449 428.328