Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3160g00003 ATGAGAAAAGTTTCGATCTTTGATTGGTTTTCGTCGATGGAGGGCGAGGCCGGTTCGGAGGGAGACAATAAGCGGAAAAGGGGTGGCGCAGATGATAACAGCAACGACAATAATGGAAGCAATAGCAAGATTGCGAATTCCAATGAGGGGCAGAGCAAGCCCAAGCGCCAGATGAAGACCCCCTTTCAGCTTCAAAATCTCGAGAAAGCTTATGCTTTGGATACTTATCCTTCGGAGGCGATGAGATTAGAGTTGTCGGAAAAGTTGGGGTTGTCGGATTGGCAACTGCAGATGTGGTTCTGTCATAGGAGGTTGAAGGAGTTTCCTCCCAAGAAACGGCTGCGGAAGGTGGCAGCAGAACCTTTGCCAGATTCCCCCACAGATGACATGAGGTTGGACCCTGAAATTGGCAATGAGTATGGATCCGGGTCGGGTTCGGAGGGAGACAATAAGCGGAAAAGGGGTGGCGCAGATGATAACAGCAACGACAATAATGGAAGCAATAGCAAGATTGCGAATTCCAATGCGGGGCAGAGCAAGCCCAAGCGCCAGATGAAGACCCCCTTTCAGCTTCAAAATCTCGAGAAAGCTTATGCTTTGGATATTTATCCTTCGGAGGCGATGAGATTAGAGTTGTCGGAAAAGTTGGGGTTGTCGGATTGGCAACTGCAGATGTGGTTGAAGGAGTTGCCTCTCAAGAAACGGCTGCGGAAGGTGGCAGCAGAGCCTTTGCCAGATTCCCCCACAGATGACATGAGGTTGGACCCTGAACTTGGCAATGAGTATGGATCCGGGTCGGGTTCGGGGTCCAGCGCGCTTACCCGTTCTGAGTCCCGGAATGCGATGCCCCAGGGCTTGCCGGGTTATTATGAGTCCCCTCAGGCTGGAATGGAGCGTAGAGCAATTGCTTCTGTGGAGGCACAGTTAGGGGAGCCGTTGAGGGAAGATGGACCCATTCTAGGAGTAGAGTTTGACCCATTGCCACCAGATGCATTTGGGGCACCCGTAGAAGCTTCCTTCAAGATATAA 1029 0.5141 MRKVSIFDWFSSMEGEAGSEGDNKRKRGGADDNSNDNNGSNSKIANSNEGQSKPKRQMKTPFQLQNLEKAYALDTYPSEAMRLELSEKLGLSDWQLQMWFCHRRLKEFPPKKRLRKVAAEPLPDSPTDDMRLDPEIGNEYGSGSGSEGDNKRKRGGADDNSNDNNGSNSKIANSNAGQSKPKRQMKTPFQLQNLEKAYALDIYPSEAMRLELSEKLGLSDWQLQMWLKELPLKKRLRKVAAEPLPDSPTDDMRLDPELGNEYGSGSGSGSSALTRSESRNAMPQGLPGYYESPQAGMERRAIASVEAQLGEPLREDGPILGVEFDPLPPDAFGAPVEASFKI 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3160g00003 342 ProSiteProfiles 'Homeobox' domain profile. 50 110 IPR001356 GO:0003677
Gabi3160g00003 342 Gene3D - 163 238 - -
Gabi3160g00003 342 Gene3D - 36 113 - -
Gabi3160g00003 342 ProSiteProfiles 'Homeobox' domain profile. 177 237 IPR001356 GO:0003677
Gabi3160g00003 342 Pfam Homeodomain 53 107 IPR001356 GO:0003677
Gabi3160g00003 342 Pfam Homeodomain 180 226 IPR001356 GO:0003677
Gabi3160g00003 342 MobiDBLite consensus disorder prediction 18 32 - -
Gabi3160g00003 342 SUPERFAMILY Homeodomain-like 167 228 IPR009057 -
Gabi3160g00003 342 SMART HOX_1 52 114 IPR001356 GO:0003677
Gabi3160g00003 342 SMART HOX_1 179 241 IPR001356 GO:0003677
Gabi3160g00003 342 MobiDBLite consensus disorder prediction 14 57 - -
Gabi3160g00003 342 MobiDBLite consensus disorder prediction 116 184 - -
Gabi3160g00003 342 MobiDBLite consensus disorder prediction 263 281 - -
Gabi3160g00003 342 CDD homeodomain 182 228 IPR001356 GO:0003677
Gabi3160g00003 342 SUPERFAMILY Homeodomain-like 40 107 IPR009057 -
Gabi3160g00003 342 MobiDBLite consensus disorder prediction 33 57 - -
Gabi3160g00003 342 CDD homeodomain 55 107 IPR001356 GO:0003677
Gabi3160g00003 342 MobiDBLite consensus disorder prediction 160 184 - -
Gabi3160g00003 342 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 165 336 IPR044977 GO:0006357
Gabi3160g00003 342 MobiDBLite consensus disorder prediction 241 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3160g00003 Gabi-Chr3160 29375 32905 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3160g00003 145 336 Homeobox Transcription Factor Family AT1G28420 43.836 5.12e-38 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Gabi3160g00003 Homeodomain 1.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3160g00003 - - lja:Lj4g3v0473650.1 256.914