Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi315g00006 ATGAAGTCGTCTTCTGTCTGGCCTTCAGCGGCTAACGCTATGGAACATCTGAACTTCACTCCTCTGAATGGAAAACCCATTCGTATTATGTATTCTCATCGAGATCCTAGCCTTCGGAAAAGTGGATATGGAAATGTGTTCATCAAGAACCTGGACACATTAATAGATAACAAGGCATTGAATGACACTTTTGCTGCCTTTGGAACTGTACTTTCTTGTAAGGTAGCTGTTGATGGTAGTGGTCAATCAAAAGGGTATGGTTTTGTACAATTTGACAATGATGAGTCTGCACAGAATGCCATCAAAAAGTTGAATGGCATGTTGATCAATGATAAAAAGGTCTATGTTGGACTCTTTGTTCCACGCCAGGAAAGGGCTCTAGTAAATGGATCACCAAAGTTCACTAATGTGTATGTGAAAAACTTCTCTGAAACTTATACTGATGAGGACCTTGGGCAGCTCTTTAGCCCCTGTGGTACAATAACTAGTTCCGTGGTCATGAAAGACATGAATGGGAAATCTAGATGTTTTGGTTTTGTGAATTTCCAAAGTCCAGACTCAGCAGCTGCTGCAGTTGAGAAGTTAAACGGAACAATGATCAATGCTGAAAATGTTTTATTTGTTGGGAGGGCTCAGAGAAAAGTTGAAAGAGAGGCAGAATTGAAAGCTAAATTTGAACAGGAAAGAATAAGCAGATATGAAAAATTACAAGGTGCTAATTTATACCTGAAAAACCTTGATGATAGCATTAATGATGAAAAATTAAAGGAGCTATTTTCTGATTTTGGAACAATAACATCTTGCAAGGTGATGCTTGATTCACATGGCCATAGCAAGGGTTCTGGTTTTGTTGCCTTTTCTACTCCTGAGGAAGCAAGTAAAGCTTTGAGGGAAATGAATGGAAAGATGATTGGACCGAAGCGTCTGTATGTTGCTGTGGCCCAGCGCAAAGAAGAGAGAAAGGCTCAGTTGCAGGCTCAGTTTTCTCAAATGCAAACACCGGGTGGAATTGCACCTCTGCCTGTAGGAATTCCTGGATATCATCCTGGGGCACCAAGACTTGCCCCTCAACAAATGTATTTTGGTCAAGGTACACCTGGTCTCATGCCACCTCAGCCAGTAGGATATGGTTTCCAGCAGCAACTCATGCCAGGTATGCGACCCGGTGTTGCTCCAAATTTCATTATGCCATACCATCTTCAGAGACAGGGTCAGTCTGGGCAGAGGATGAATGTTCGACGAGTTGGAAACATGCAACAAGTGCAGCAGAACCATATGCTACATCGTAACTCCAACCAAGGGTATAGATATATTGGGAATGGTCGAAATGGAATGGATCCATCAATAGTTCCCCAAGGTCTAGCAGGTCCTATGATGCCATTTCCCTTTGACGGCACAGGAGTTGCTGCAACTCCGATTGATAATCAGGGTCCTGGTGCATTGTCCAACACACTTGCTTCTGCCTTGGCTTCTGCTACCCCAGAAAATCAGCATCTGATGCTGGGTGAACATCTATATCCGCTTGTGGACCGTCTTACACCAAGCCATCAAACAGCAAAGGTGACAGGAATGTTGCTGGAAATGGATCAGTCAGAGGTAATTCATCTGATTGAATCTCCCGAAGATTTGAAGATAAAGGTGTCTGAGGCAATGCAAGTCCTTCGTGAAGCCGCATCAGGTTCTGAAGTTGGTGATCAGCTTGGCTCATTGTCATTGAATGAGTGA 1725 0.4319 MKSSSVWPSAANAMEHLNFTPLNGKPIRIMYSHRDPSLRKSGYGNVFIKNLDTLIDNKALNDTFAAFGTVLSCKVAVDGSGQSKGYGFVQFDNDESAQNAIKKLNGMLINDKKVYVGLFVPRQERALVNGSPKFTNVYVKNFSETYTDEDLGQLFSPCGTITSSVVMKDMNGKSRCFGFVNFQSPDSAAAAVEKLNGTMINAENVLFVGRAQRKVEREAELKAKFEQERISRYEKLQGANLYLKNLDDSINDEKLKELFSDFGTITSCKVMLDSHGHSKGSGFVAFSTPEEASKALREMNGKMIGPKRLYVAVAQRKEERKAQLQAQFSQMQTPGGIAPLPVGIPGYHPGAPRLAPQQMYFGQGTPGLMPPQPVGYGFQQQLMPGMRPGVAPNFIMPYHLQRQGQSGQRMNVRRVGNMQQVQQNHMLHRNSNQGYRYIGNGRNGMDPSIVPQGLAGPMMPFPFDGTGVAATPIDNQGPGALSNTLASALASATPENQHLMLGEHLYPLVDRLTPSHQTAKVTGMLLEMDQSEVIHLIESPEDLKIKVSEAMQVLREAASGSEVGDQLGSLSLNE 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi315g00006 574 FunFam Polyadenylate-binding protein 222 327 - -
Gabi315g00006 574 Gene3D - 480 559 - -
Gabi315g00006 574 SUPERFAMILY PABC (PABP) domain 420 559 IPR036053 GO:0003723
Gabi315g00006 574 SMART rrm2_1 240 312 IPR003954 GO:0003676
Gabi315g00006 574 SMART rrm2_1 45 117 IPR003954 GO:0003676
Gabi315g00006 574 SMART rrm2_1 136 208 IPR003954 GO:0003676
Gabi315g00006 574 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 44 121 IPR000504 GO:0003723
Gabi315g00006 574 SMART poly_2 493 557 IPR002004 GO:0003723
Gabi315g00006 574 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 481 559 IPR002004 GO:0003723
Gabi315g00006 574 Coils Coil 208 236 - -
Gabi315g00006 574 SUPERFAMILY RNA-binding domain, RBD 235 330 IPR035979 GO:0003676
Gabi315g00006 574 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 135 213 IPR000504 GO:0003723
Gabi315g00006 574 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 9 555 IPR006515 GO:0003723
Gabi315g00006 574 CDD RRM3_I_PABPs 134 214 - -
Gabi315g00006 574 Pfam Poly-adenylate binding protein, unique domain 489 554 IPR002004 GO:0003723
Gabi315g00006 574 SMART rrm1_1 240 312 IPR000504 GO:0003723
Gabi315g00006 574 SMART rrm1_1 136 209 IPR000504 GO:0003723
Gabi315g00006 574 SMART rrm1_1 45 117 IPR000504 GO:0003723
Gabi315g00006 574 Gene3D - 237 338 IPR012677 -
Gabi315g00006 574 CDD RRM2_I_PABPs 42 117 IPR045305 -
Gabi315g00006 574 FunFam Polyadenylate-binding protein 478 560 - -
Gabi315g00006 574 SUPERFAMILY RNA-binding domain, RBD 132 220 IPR035979 GO:0003676
Gabi315g00006 574 Gene3D - 9 116 IPR012677 -
Gabi315g00006 574 FunFam Polyadenylate-binding protein 38 125 - -
Gabi315g00006 574 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 137 202 IPR000504 GO:0003723
Gabi315g00006 574 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 241 309 IPR000504 GO:0003723
Gabi315g00006 574 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 46 114 IPR000504 GO:0003723
Gabi315g00006 574 CDD RRM4_I_PABPs 238 316 - -
Gabi315g00006 574 Gene3D - 40 94 IPR012677 -
Gabi315g00006 574 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 239 316 IPR000504 GO:0003723
Gabi315g00006 574 PANTHER RNA BINDING PROTEIN 8 345 - -
Gabi315g00006 574 Gene3D - 126 236 IPR012677 -
Gabi315g00006 574 SUPERFAMILY RNA-binding domain, RBD 9 124 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi315g00006 Gabi-Chr315 114248 118146 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi315g00006 10 568 Eukaryotic Initiation Factors Gene Family AT1G71770 56.794 0.0 611
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi315g00006 K13126 - gmx:100783163 936.791