Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi315g00005 ATGGCAGCGGCGGTTCCTGCGGCGGCGACAGAGACGACAGTGGCCGGGGGTCAATTTTTGAATTCATCTCTGTACGTTGGTGATCTTGAGGGGAATGTGAATGAGGGACAGCTCTATGATCTATTCAACCAGGTGGCTCAGGTGGTTTCTATTAGGGTTTGCAGGGATCAGACAAGGCGATCCTCTCTTGGTTACGCTTATGTCAACTTTTCCAATGCTCACGATGCGGCTAACGCTATGGAACATCTGAACTTCACTCCTCTGAATGGAAAACCCATTCGTATTATGTATTCTCATCGAGATCCTAGCCTTCGGAAAAGTGGATATGGAAATGTGTTCATCAAGAACCTGGACACATTAATAGATAACAAGGCATTGAATGACACTTTTGCTGCCTTTGGAACTGTACTTTCTTGTAAGGTAGCTGTTGATGGTAGTGGTCAATCAAAAGGGTATGGTTTTGTACAATTTGACAATGATGAGTCTGCACAGAATGCCATCAAAAAGTTGAATGGCATGTTGATCAATGATAAAAAGGTCTATGTTGGACTCTTTGTTCCACGCCAGGAAAGGGCTCTAGTAAATGGATCACCAAAGTTCACTAATGTGTATGTGAAAAACTTCTCTGAAACTTATACTGATGAGGACCTTGGGCAGCTCTTTAGCCCCTGTGGTACAATAACTAGTTCCGTGGTCATGAAAGACATGAATGGGAAATCTAGATGTTTTGGTTTTGTGAATTTCCAAAGTCCAGACTCAGCAGCTGCTGCAGTTGAGAAGTTAAACGGAACAATGATCAATGCTGAAAATGTTTTATTTGTTGGGAGGGCTCAGAGAAAAGTTGAAAGAGAGGCAGAATTGAAAGCTAAATTTGAACAGGAAAGAATAAGCAGATATGAAAAATTACAAGGTGCTAATTTATACCTGAAAAACCTTGATGATAGCATTAATGATGAAAAATTAAAGGAGCTATTTTCTGATTTTGGAACAATAACATCTTGCAAGGTGATGCTTGATTCACATGGCCATAGCAAGGGTTCTGGTTTTGTTGCCTTTTCTACTCCTGAGGAAGCAAGTAAAGCTTTGAGGGAAATGAATGGAAAGATGATTGGACCGAAGCGTCTGTATGTTGCTGTGGCCCAGCGCAAAGAAGAGAGAAAGGCTCAGTTGCAGGCTCAGTTTTCTCAAATGCAAACACCGGGTGGAATTGCACCTCTGCCTGTAGGAATTCCTGGATATCATCCTGGGGCACCAAGACTTGCCCCTCAACAAATGTATTTTGGTCAAGGTACACCTGGTCTCATGCCACCTCAGCCAGTAGGATATGGTTTCCAGCAGCAACTCATGCCAGGTATGCGACCCGGTGTTGCTCCAAATTTCATTATGCCATACCATCTTCAGAGACAGGGTCAGTCTGGGCAGAGGATGAATGTTCGACGAGTTGGAAACATGCAACAAGTGCAGCAGAACCATATGCTACATCGTAACTCCAACCAAGGGTATAGATATATTGGGAATGGTCGAAATGGAATGGATCCATCAATAGTTCCCCAAGGTCTAGCAGGTCCTATGATGCCATTTCCCTTTGACGGCACAGGAGTTGCTGCAACTCCGATTGATAATCAGGGTCCTGGTGCATTGTCCAACACACTTGCTTCTGCCTTGGCTTCTGCTACCCCAGAAAATCAGCATCTGATGCTGGGTGAACATCTATATCCGCTTGTGGACCGTCTTACACCAAGCCATCAAACAGCAAAGGTGACAGGAATGTTGCTGGAAATGGATCAGTCAGAGGTAATTCATCTGATTGAATCTCCCGAAGATTTGAAGATAAAGGTGTCTGAGGCAATGCAAGTCCTTCGTGAAGCCGCATCAGGTTCTGAAGTTGGTGATCAGCTTGGCTCATTGTCATTGAATGAGTGA 1923 0.4399 MAAAVPAAATETTVAGGQFLNSSLYVGDLEGNVNEGQLYDLFNQVAQVVSIRVCRDQTRRSSLGYAYVNFSNAHDAANAMEHLNFTPLNGKPIRIMYSHRDPSLRKSGYGNVFIKNLDTLIDNKALNDTFAAFGTVLSCKVAVDGSGQSKGYGFVQFDNDESAQNAIKKLNGMLINDKKVYVGLFVPRQERALVNGSPKFTNVYVKNFSETYTDEDLGQLFSPCGTITSSVVMKDMNGKSRCFGFVNFQSPDSAAAAVEKLNGTMINAENVLFVGRAQRKVEREAELKAKFEQERISRYEKLQGANLYLKNLDDSINDEKLKELFSDFGTITSCKVMLDSHGHSKGSGFVAFSTPEEASKALREMNGKMIGPKRLYVAVAQRKEERKAQLQAQFSQMQTPGGIAPLPVGIPGYHPGAPRLAPQQMYFGQGTPGLMPPQPVGYGFQQQLMPGMRPGVAPNFIMPYHLQRQGQSGQRMNVRRVGNMQQVQQNHMLHRNSNQGYRYIGNGRNGMDPSIVPQGLAGPMMPFPFDGTGVAATPIDNQGPGALSNTLASALASATPENQHLMLGEHLYPLVDRLTPSHQTAKVTGMLLEMDQSEVIHLIESPEDLKIKVSEAMQVLREAASGSEVGDQLGSLSLNE 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi315g00005 640 Gene3D - 546 625 - -
Gabi315g00005 640 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 305 382 IPR000504 GO:0003723
Gabi315g00005 640 FunFam Polyadenylate-binding protein 15 107 - -
Gabi315g00005 640 SUPERFAMILY RNA-binding domain, RBD 22 190 IPR035979 GO:0003676
Gabi315g00005 640 Gene3D - 302 404 IPR012677 -
Gabi315g00005 640 SMART rrm2_1 306 378 IPR003954 GO:0003676
Gabi315g00005 640 SMART rrm2_1 202 274 IPR003954 GO:0003676
Gabi315g00005 640 SMART rrm2_1 23 96 IPR003954 GO:0003676
Gabi315g00005 640 SMART rrm2_1 111 183 IPR003954 GO:0003676
Gabi315g00005 640 CDD RRM3_I_PABPs 200 280 - -
Gabi315g00005 640 CDD RRM4_I_PABPs 304 382 - -
Gabi315g00005 640 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 201 279 IPR000504 GO:0003723
Gabi315g00005 640 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 547 625 IPR002004 GO:0003723
Gabi315g00005 640 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 307 375 IPR000504 GO:0003723
Gabi315g00005 640 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 203 268 IPR000504 GO:0003723
Gabi315g00005 640 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 24 94 IPR000504 GO:0003723
Gabi315g00005 640 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 112 180 IPR000504 GO:0003723
Gabi315g00005 640 SUPERFAMILY RNA-binding domain, RBD 195 284 IPR035979 GO:0003676
Gabi315g00005 640 SMART poly_2 559 623 IPR002004 GO:0003723
Gabi315g00005 640 Gene3D - 193 301 IPR012677 -
Gabi315g00005 640 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 110 187 IPR000504 GO:0003723
Gabi315g00005 640 Gene3D - 17 110 IPR012677 -
Gabi315g00005 640 FunFam Polyadenylate-binding protein 288 393 - -
Gabi315g00005 640 CDD RRM2_I_PABPs 108 183 IPR045305 -
Gabi315g00005 640 FunFam Polyadenylate-binding protein 544 626 - -
Gabi315g00005 640 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 22 621 IPR006515 GO:0003723
Gabi315g00005 640 Gene3D - 111 184 IPR012677 -
Gabi315g00005 640 Pfam Poly-adenylate binding protein, unique domain 555 620 IPR002004 GO:0003723
Gabi315g00005 640 SMART rrm1_1 202 275 IPR000504 GO:0003723
Gabi315g00005 640 SMART rrm1_1 23 96 IPR000504 GO:0003723
Gabi315g00005 640 SMART rrm1_1 111 183 IPR000504 GO:0003723
Gabi315g00005 640 SMART rrm1_1 306 378 IPR000504 GO:0003723
Gabi315g00005 640 PANTHER RNA BINDING PROTEIN 23 84 - -
Gabi315g00005 640 FunFam Polyadenylate-binding protein 108 191 - -
Gabi315g00005 640 Coils Coil 274 302 - -
Gabi315g00005 640 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 22 100 IPR000504 GO:0003723
Gabi315g00005 640 SUPERFAMILY PABC (PABP) domain 486 625 IPR036053 GO:0003723
Gabi315g00005 640 SUPERFAMILY RNA-binding domain, RBD 301 396 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi315g00005 Gabi-Chr315 113766 118146 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi315g00005 21 634 Eukaryotic Initiation Factors Gene Family AT1G71770 58.029 0.0 687
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi315g00005 K13126 - gmx:100783163 1039.64