Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3159g00033 ATGGGAGGGGCATCACTGCCTCCGGGTTTTCGTTTCCATCCAACTGATGAAGAACTGCTAGGATATTACCTAAAAAGAAAAGTGGAGGGGCTTGAAATTGAGCTTGAAGTTATCCCCGTGATTGATTTGTACAAATTTGATCCCTGGGAGTTGCCGGAGAAATCGTTCCTACCAAAAAGAGATTTGGAATGGTTTTTCTTCTGTCCACGGGATCGCAAGTACCCAAATGGATCACGGACAAATAGAGCTACCAAAGCTGGGTACTGGAAAGCCACTGGAAAAGACAGAAAGGTTGTATGCCATTCTTGTCCACACATATCCACCACATCCACTGTGACAGGTTTCCGCAAGACCCTTGTTTTCTATCGTGGAAGGGCCCCCTTAGGAGATCGAACGGATTGGGTCATGCATGAGTATCGCCTATGTGATGATATTGGCCAAGGCTCACAGGGTGCTTTTGCTTTGTGCCGAGTTATTAAAAAGAATGAGAAGGCCAATGATTCCCAAGGAGAACAAAAGGGTAAAGGAAAGGGTGAGGGCAACTCCACCAATGGGAATGACAACTCAATGAGATTCTCCGACCAGCTTTCCATTATCTCTGGTGACATTTCCTCTCAGGTTAGTCAACTGTGCAGCGAGAGTCGTTATTCAAGCCCTATTGATTCTCCTTACAATGTGGCTCCAGTGCAAGCTTCCTTGGACACCAATCCTTCCAACATCTGGGTCTCCCCTGATATGATTCTTGATTCTTCAAAGCTGCAGGAATACTGTCAAATTCAAGATGGTGTTGGATTCTTTCCACAGTATGACTTACCAAGTACTATGTTTGAACATACAGAAATTTCACCCAGTTCATCATACTCAAATTTTAATGTGGAAATTGAATTTGCTGATGATCTCAGTCGAATTGGCTGCATGTCACCTTATTCCGGACAAGGAAACTTCATGGACTTTTATGGAAATGCAGATGTGACTTATGAAGGTTATGACCAAATTAATTCAATCGGGGACCTTAAACAATTCTGA 1026 0.4357 MGGASLPPGFRFHPTDEELLGYYLKRKVEGLEIELEVIPVIDLYKFDPWELPEKSFLPKRDLEWFFFCPRDRKYPNGSRTNRATKAGYWKATGKDRKVVCHSCPHISTTSTVTGFRKTLVFYRGRAPLGDRTDWVMHEYRLCDDIGQGSQGAFALCRVIKKNEKANDSQGEQKGKGKGEGNSTNGNDNSMRFSDQLSIISGDISSQVSQLCSESRYSSPIDSPYNVAPVQASLDTNPSNIWVSPDMILDSSKLQEYCQIQDGVGFFPQYDLPSTMFEHTEISPSSSYSNFNVEIEFADDLSRIGCMSPYSGQGNFMDFYGNADVTYEGYDQINSIGDLKQF 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3159g00033 341 Gene3D NAC domain 15 166 IPR036093 GO:0003677|GO:0006355
Gabi3159g00033 341 Pfam No apical meristem (NAM) protein 7 141 IPR003441 GO:0003677|GO:0006355
Gabi3159g00033 341 ProSiteProfiles NAC domain profile. 6 161 IPR003441 GO:0003677|GO:0006355
Gabi3159g00033 341 FunFam Nac domain-containing protein 86 15 164 - -
Gabi3159g00033 341 MobiDBLite consensus disorder prediction 164 191 - -
Gabi3159g00033 341 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 212 - -
Gabi3159g00033 341 MobiDBLite consensus disorder prediction 175 191 - -
Gabi3159g00033 341 SUPERFAMILY NAC domain 4 161 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3159g00033 Gabi-Chr3159 463841 466423 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3159g00033 1 295 NAC Transcription Factor Family AT4G17980 54.967 4.76e-101 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gabi3159g00033 NAM 2.4e-38 No_clan