Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3159g00032 ATGGGAGGGGCATCACTGCCTCCGGGTTTTCGTTTCCATCCAACTGATGAAGAACTGCTAGGATATTACCTAAAAAGAAAAGTGGAGGGGCTTGAAATTGAGCTTGAAGTTATCCCCGTGATTGATTTGTACAAATTTGATCCCTGGGAGTTGCCGGAGAAATCGTTCCTACCAAAAAGAGATTTGGAATGGTTTTTCTTCTGTCCACGGGATCGCAAGTACCCAAATGGATCACGGACAAATAGAGCTACCAAAGCTGGGTACTGGAAAGCCACTGGAAAAGACAGAAAGGTTGTATGCCATTCTTGTCCACACATATCCACCACATCCACTGTGACAGGTTTCCGCAAGACCCTTGTTTTCTATCGTGGAAGGGCCCCCTTAGGAGATCGAACGGATTGGGTCATGCATGAGTATCGCCTATGTGATGATATTGGCCAAGGCTCACAGGGTGCTTTTGCTTTGTGCCGAGTTATTAAAAAGAATGAGAAGGCCAATGATTCCCAAGGAGAACAAAAGGGTAAAGGAAAGGGTGAGGGCAACTCCACCAATGGGAATGACAACTCAATGAGATTCTCCGACCAGCTTTCCATTATCTCTGGTGACATTTCCTCTCAGGTTAGTCAACTGTGCAGCGAGAGTCGTTATTCAAGCCCTATTGATTCTCCTTACAATGTGGCTCCAGTGCAAGCTTCCTTGGACACCAATCCTTCCAACATCTGGGTCTCCCCTGATATGATTCTTGATTCTTCAAAGGAATACTGTCAAATTCAAGATGGTGTTGGATTCTTTCCACAGTATGACTTACCAAGTACTATGTTTGAACATACAGAAATTTCACCCAGTTCATCATACTCAAATTTTAATGTGGAAATTGAATTTGCTGATGATCTCAGTCGAATTGGCTGCATGTCACCTTATTCCGGACAAGGAAACTTCATGGACTTTTATGGAAATGCAGATGTGACTTATGAAGGTTATGACCAAATTAATTCAATCGGGGACCTTAAACAATTCTGA 1020 0.4343 MGGASLPPGFRFHPTDEELLGYYLKRKVEGLEIELEVIPVIDLYKFDPWELPEKSFLPKRDLEWFFFCPRDRKYPNGSRTNRATKAGYWKATGKDRKVVCHSCPHISTTSTVTGFRKTLVFYRGRAPLGDRTDWVMHEYRLCDDIGQGSQGAFALCRVIKKNEKANDSQGEQKGKGKGEGNSTNGNDNSMRFSDQLSIISGDISSQVSQLCSESRYSSPIDSPYNVAPVQASLDTNPSNIWVSPDMILDSSKEYCQIQDGVGFFPQYDLPSTMFEHTEISPSSSYSNFNVEIEFADDLSRIGCMSPYSGQGNFMDFYGNADVTYEGYDQINSIGDLKQF 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3159g00032 339 ProSiteProfiles NAC domain profile. 6 161 IPR003441 GO:0003677|GO:0006355
Gabi3159g00032 339 Pfam No apical meristem (NAM) protein 7 141 IPR003441 GO:0003677|GO:0006355
Gabi3159g00032 339 MobiDBLite consensus disorder prediction 164 191 - -
Gabi3159g00032 339 Gene3D NAC domain 15 166 IPR036093 GO:0003677|GO:0006355
Gabi3159g00032 339 MobiDBLite consensus disorder prediction 175 191 - -
Gabi3159g00032 339 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 212 - -
Gabi3159g00032 339 FunFam Nac domain-containing protein 86 15 164 - -
Gabi3159g00032 339 SUPERFAMILY NAC domain 4 161 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3159g00032 Gabi-Chr3159 463841 466423 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3159g00032 1 293 NAC Transcription Factor Family AT4G17980 55.333 4.72e-103 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gabi3159g00032 NAM 2.4e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3159g00032 - - gmx:100792714 496.508