Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3159g00030 ATGCCAGTTCCACTTGCCCCCTACCCGACACCACCAGCTCCATATACACCTCCAGCAAATGGGAAGACTGGGGCACAGAGTCAACTTGTCTGTTCTGGGTGTAGAAACCTTCTGCTCTATCCAATTGGAGCCACCTCTGTGTGCTGTGCTGTTTGCAATGCAGTCACAGCAGTGCCACCTCCTGGCACAGAAATGGCCCAGTTAGTTTGTGGAGGCTGTCACACTTTCCTCATGTACATCCGTGGAGCCACAAGTGTGCACTGCTCTTGTTGTCACACAGTCAATCTAGCTTTGGAAGCAAATCAGGTGGCACATGTCAACTGTGGGAATTGTAGGATGCTACTCAGGTACCAATATGGAGCTAGGTCCGTGAAATGTGCGGTTTGCAGTTTTGTAACATCAATTGGGGCCTCAACAAGCACCATTGAGCAGAAATTCATCTCCTAA 447 0.4966 MPVPLAPYPTPPAPYTPPANGKTGAQSQLVCSGCRNLLLYPIGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTFLMYIRGATSVHCSCCHTVNLALEANQVAHVNCGNCRMLLRYQYGARSVKCAVCSFVTSIGASTSTIEQKFIS 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3159g00030 148 PANTHER PROTEIN LSD1 26 137 IPR040319 -
Gabi3159g00030 148 Pfam LSD1 zinc finger 70 94 IPR005735 -
Gabi3159g00030 148 Pfam LSD1 zinc finger 108 132 IPR005735 -
Gabi3159g00030 148 Pfam LSD1 zinc finger 31 55 IPR005735 -
Gabi3159g00030 148 NCBIfam zinc finger domain, LSD1 subclass 28 58 IPR005735 -
Gabi3159g00030 148 NCBIfam zinc finger domain, LSD1 subclass 105 134 IPR005735 -
Gabi3159g00030 148 NCBIfam zinc finger domain, LSD1 subclass 67 96 IPR005735 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3159g00030 Gabi-Chr3159 434976 437183 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Gabi3159g00030 zf-LSD1 3.3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3159g00030 - - cit:102618163 256.144