Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3159g00029 ATGCCAGTTCCACTTGCCCCCTACCCGACACCACCAGCTCCATATACACCTCCAGCAAATGGGGCACAGAGTCAACTTGTCTGTTCTGGGTGTAGAAACCTTCTGCTCTATCCAATTGGAGCCACCTCTGTGTGCTGTGCTGTTTGCAATGCAGTCACAGCAGTGCCACCTCCTGGCACAGAAATGGCCCAGTTAGTTTGTGGAGGCTGTCACACTTTCCTCATGTACATCCGTGGAGCCACAAGTGTGCACTGCTCTTGTTGTCACACAGTCAATCTAGCTTTGGAAGCAAATCAGGTGGCACATGTCAACTGTGGGAATTGTAGGATGCTACTCAGGTACCAATATGGAGCTAGGTCCGTGAAATGTGCGGTTTGCAGTTTTGTAACATCAATTGGGGCCTCAACAAGCACCATTGAGCAGAAATTCATCTCCTAA 438 0.4954 MPVPLAPYPTPPAPYTPPANGAQSQLVCSGCRNLLLYPIGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTFLMYIRGATSVHCSCCHTVNLALEANQVAHVNCGNCRMLLRYQYGARSVKCAVCSFVTSIGASTSTIEQKFIS 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3159g00029 145 Pfam LSD1 zinc finger 67 91 IPR005735 -
Gabi3159g00029 145 Pfam LSD1 zinc finger 105 129 IPR005735 -
Gabi3159g00029 145 Pfam LSD1 zinc finger 28 52 IPR005735 -
Gabi3159g00029 145 NCBIfam zinc finger domain, LSD1 subclass 102 131 IPR005735 -
Gabi3159g00029 145 NCBIfam zinc finger domain, LSD1 subclass 25 55 IPR005735 -
Gabi3159g00029 145 NCBIfam zinc finger domain, LSD1 subclass 64 93 IPR005735 -
Gabi3159g00029 145 PANTHER PROTEIN LSD1 16 55 IPR040319 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3159g00029 Gabi-Chr3159 434976 437183 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Gabi3159g00029 zf-LSD1 3.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3159g00029 - - cit:102618163 261.536