Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3159g00026 ATGGGGGGCTCAAGTGAGAGTACTTCAATAGGGGTAGAACAACCTCAAGTAGATGACGTATGTAATGAAAGGCTGGGGCTTGAAGATGGAAGAATACACAAGGTGGAGTTGGAAGTTGCTGAAATGGATTTCAAGTTGAAGTATGAAAGGAAGCTGAATGAGCTATGCTTGAAGATGGTTTCAGAGTTAGATAGGATGAACAATGAAATTAGGTATGTTAGTTGGTCAGCTAAAGTCATAGTTGGTGCTTGTGAACAGCTAAACATGGTGGTGGGTGGCGGTTCCTACCCCGATACAATGACCCGGTTCGCATTCAACAACAACGCCACCCATTACGACGGTTTGACGCCGTGCGACTCCGTCAAGAAGAAGAGGGGCCGTCCGAGGAAGTACTCGCCTTCGCCAGCTGGCAACATCGCTTTGGGTTTGACTCCCACACATGTGTCTTGTGCTTCTTCCGCACCCTCCACTGAACCTCTGGCCAAGAAGAATAGGGGAAGACCCTCTGGCTCTGTAAAGAAGCAGCTTAACGCGCTTGGAACTGGTGGGACTGGTTTTACTCCTCATGTAATCTTGGTTGATACTGGCGAGGACATTGCTGCAAAAATTATGGCCTTTTGTCAACAAGGACCCCGGACAGTTTGCATTCTTTCTGCTAATGGTGCAATCTGCAATGTCACCCTTAGACAGCCAGCAGTGTCTGGGGGTACTGTGACATATGAGGACAAATTTGAGATTATATCCCTTTCAGGTTCTTTACTACTATCTGAAAATAATAGTGGTTGCAGCAGAACGGGTGGCTTGAGTGTTGTCATCGCAAGGTCTGATGGACTAGTATTGGGTGGCGGAGTTGCTGGAATGCTTACTGCTGCATCACCAGTACAGGTCATTGTGGGTAGCTTTATTGCGGATAGCAAAAAGTCTAGCTCAAATAACCTGAAATCTGGGCCATCTACGACGCCATCATCCCAAATGTTAACTTTTGATGCTACTATGACTCCAAGCAGTCCTATCTCTCAAGGGCCTTCCAATGAGTACTCTGATGACAATGATAATAGTCCTTTTAGTAGGGGGCCTGGACTCTACAATAATGCTAGTCAGCCCACTTATATTATGCCAGCGTACCATCATCAATTGTGGGCTGGCCAAACTCAGCAGTGA 1161 0.4677 MGGSSESTSIGVEQPQVDDVCNERLGLEDGRIHKVELEVAEMDFKLKYERKLNELCLKMVSELDRMNNEIRYVSWSAKVIVGACEQLNMVVGGGSYPDTMTRFAFNNNATHYDGLTPCDSVKKKRGRPRKYSPSPAGNIALGLTPTHVSCASSAPSTEPLAKKNRGRPSGSVKKQLNALGTGGTGFTPHVILVDTGEDIAAKIMAFCQQGPRTVCILSANGAICNVTLRQPAVSGGTVTYEDKFEIISLSGSLLLSENNSGCSRTGGLSVVIARSDGLVLGGGVAGMLTAASPVQVIVGSFIADSKKSSSNNLKSGPSTTPSSQMLTFDATMTPSSPISQGPSNEYSDDNDNSPFSRGPGLYNNASQPTYIMPAYHHQLWAGQTQQ 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3159g00026 386 SMART AT_hook_2 122 134 IPR017956 GO:0003677
Gabi3159g00026 386 SMART AT_hook_2 162 174 IPR017956 GO:0003677
Gabi3159g00026 386 ProSiteProfiles PPC domain profile profile. 183 322 IPR005175 -
Gabi3159g00026 386 CDD DUF296 187 301 IPR005175 -
Gabi3159g00026 386 Gene3D - 188 315 - -
Gabi3159g00026 386 MobiDBLite consensus disorder prediction 306 362 - -
Gabi3159g00026 386 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 109 355 IPR039605 GO:0003680
Gabi3159g00026 386 MobiDBLite consensus disorder prediction 150 173 - -
Gabi3159g00026 386 Pfam Plants and Prokaryotes Conserved (PCC) domain 188 301 IPR005175 -
Gabi3159g00026 386 SUPERFAMILY AF0104/ALDC/Ptd012-like 185 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3159g00026 Gabi-Chr3159 400357 403707 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3159g00026 116 364 AT-hook Motif Nuclear Localized (AHL) Family AT2G33620 52.941 3.10e-70 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3159g00026 - - qsa:O6P43_033975 360.918