Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3159g00023 ATGGCATGCCAGATCCAAAAATCCCAACACCACAATAAAAATCAAACTCAACCAAACCCTAACTCCACCACAAGTACCACAGCTTCATCATCATCATCAACTTGGATGTGGAACCCTAGGGAACACCACGAAGATGATGACTCATGGGAGGTAAGAGCTTTTGCAGAAGACACAAGGAACATCATGGGCACCACATGGCCTCCAAGGTCCTATACCTGCACCTTCTGCAGAAGGGAGTTCCGCTCAGCCCAAGCTCTTGGTGGCCACATGAACGTGCACCGCCGTGACCGTGCTCGTCTCCACCAAGCGCAACCGTCCGGTGGTGCCGTCAACCACCCCACGCCGGCATTCATAAATATCCCACCTCAGGAGCTTGTAGCAAATGCTGGATTGTGCTTCCTCTACCATTTGCCAAGCCCTAATCCCACCTTCCAAGTTCCAAGTCCCAATTCTACTCTGAATAATGCAAATGAAGAATCTCCCTCTACTCTTCTCTCCATCTCATCATACCCATCAAACAACTTGATGATGCAAACTTGTCCTCCATCCTTCAATATTTCTTCTTATTGCTGCAACTCTAGCACACTGGAACAACCAACAACCTCCTCCTCCGTTGATAATGGCCACCTCGAAGAGCTTGATCTAGAGCTACGCCTTGGGCATAAGCCAACACCAACCTGA 681 0.4919 MACQIQKSQHHNKNQTQPNPNSTTSTTASSSSSTWMWNPREHHEDDDSWEVRAFAEDTRNIMGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRARLHQAQPSGGAVNHPTPAFINIPPQELVANAGLCFLYHLPSPNPTFQVPSPNSTLNNANEESPSTLLSISSYPSNNLMMQTCPPSFNISSYCCNSSTLEQPTTSSSVDNGHLEELDLELRLGHKPTPT 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3159g00023 226 Gene3D Classic Zinc Finger 62 112 - -
Gabi3159g00023 226 MobiDBLite consensus disorder prediction 1 37 - -
Gabi3159g00023 226 ProSitePatterns Zinc finger C2H2 type domain signature. 73 93 IPR013087 -
Gabi3159g00023 226 ProSiteProfiles Zinc finger C2H2 type domain profile. 71 98 IPR013087 -
Gabi3159g00023 226 Pfam C2H2-type zinc finger 71 95 - -
Gabi3159g00023 226 SMART c2h2final6 71 93 IPR013087 -
Gabi3159g00023 226 MobiDBLite consensus disorder prediction 1 48 - -
Gabi3159g00023 226 PANTHER OS07G0101800 PROTEIN 43 223 - -
Gabi3159g00023 226 SUPERFAMILY beta-beta-alpha zinc fingers 68 98 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3159g00023 Gabi-Chr3159 349459 350139 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3159g00023 32 223 C2H2 Transcription Factor Family AT4G17810 40.476 2.23e-38 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi3159g00023 zf-C2H2_6 4.6e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3159g00023 - - gmx:100818142 291.197